PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008163-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 303aa    MW: 34733.9 Da    PI: 5.258
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008163-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.22.2e-51131401128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeelvv+yL++k++ + l++  +i+evd+yk++Pw+Lp+k+  ++kewyfF++rd+ky++g+r+nra+ +gyWkatg dk++  + 
  NNU_008163-RA  13 LPPGFRFHPTDEELVVHYLCRKASYQCLPV-PIIAEVDLYKYDPWQLPEKALFGTKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPIRPTg 107
                    79***************************9.88***************8877899*************************************9986 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    + ++vg+kk Lvfy g+apkg kt+W+mheyrl
  NNU_008163-RA 108 SARHVGIKKALVFYCGKAPKGIKTNWIMHEYRL 140
                    6678***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-639166IPR003441NAC domain
PROSITE profilePS5100559.76513166IPR003441NAC domain
PfamPF023654.5E-2714140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRARDAEAE LNLPPGFRFH PTDEELVVHY LCRKASYQCL PVPIIAEVDL YKYDPWQLPE  60
KALFGTKEWY FFTPRDRKYP NGSRPNRAAG RGYWKATGAD KPIRPTGSAR HVGIKKALVF  120
YCGKAPKGIK TNWIMHEYRL TESNLRSNKN GSLRLDDWVL CRIYNKKNNW VNSQQQKEED  180
SHEETMDSFE AVETGSESFR TPESDVDNDP FTDINDMGVT EVSPSQALHI DQVSRTDTKG  240
SFQMGECVKE DSVWFSDLNL DDLQNSFAVL GATPTLDVAI QDYYYLGLCS PQLKPYQDNQ  300
FLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-9311703172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257746.10.0PREDICTED: NAC domain-containing protein 68-like
SwissprotQ52QH41e-109NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A1U8A8B40.0A0A1U8A8B4_NELNU; NAC domain-containing protein 68-like
STRINGXP_010257746.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-86NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]