PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_008087-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | ERF | ||||||||
Protein Properties | Length: 267aa MW: 29511.6 Da PI: 6.5108 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.2e-18 | 34 | 83 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d + ++ r +lg+f taeeAa+a+++a+ l+g NNU_008087-RA 34 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 83 799******.7*********32...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.585 | 34 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-13 | 34 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-28 | 34 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-36 | 34 | 97 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.83E-32 | 34 | 90 | No hit | No description |
SuperFamily | SSF54171 | 3.14E-19 | 34 | 91 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.9E-8 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-8 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MELHVQQRKH EHGEVSVGKG SRIKGRSRTN PNNKFVGVRQ RPSGRWVAEI KDTTQKIRMW 60 LGTFETAEEA ARAYDEAACL LRGSNTRTNF ITHVSSNSPL ASRIRNLLNN KKAVVKQPPL 120 HNPSSTEGTS TATTYTSTGG STGNGDRGGN SPSFGKIHET QICNDAYRPD LSNCSGEEHE 180 LDSSKSDLSW ATGSSFDQFS FTQDGFDFPM NVGLPEASES EVAEFERLKV EKQMSSFYPM 240 NGVQETVHDL SDTLWDLPPL CQLSCSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 25 | 90 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010257631.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-11 | ||||
Swissprot | A0A1X9PY88 | 6e-91 | ERN1_LOTJA; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A1U7ZZ62 | 0.0 | A0A1U7ZZ62_NELNU; ethylene-responsive transcription factor RAP2-11 | ||||
STRING | XP_010257631.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 7e-30 | related to AP2 11 |
Publications ? help Back to Top | |||
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