PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007971-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family SBP
Protein Properties Length: 383aa    MW: 40657.2 Da    PI: 9.2496
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007971-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.61.7e-4376151176
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                    +CqvegC++dls ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  NNU_007971-RA  76 RCQVEGCKVDLSGAKAYYSRHKVCGMHSKSPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 151
                    6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-3570138IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.38574151IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-4175155IPR004333Transcription factor, SBP-box
PfamPF031107.3E-3377150IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEMGSSSLAV SAASGSSDSL NGLKFGKKIY FEDVGAGVSS KSGGGSSSVS VSEGSASAPA  60
PAKKGRGVVQ GGEPPRCQVE GCKVDLSGAK AYYSRHKVCG MHSKSPKVIV AGLEQRFCQQ  120
CSRFHQLPEF DQGKRSCRRR LAGHNERRRK PPPGSLLASR YGRLSSSLHE ASGRLGGFLM  180
DFTAYPRQPA RDVWPIIRAG DRQPNNQPMA TGKFLPHLWP GSSENPTGTA FSHSSHPYLQ  240
GSVGGTVFSS SGMHPGECFA GVSDSSCALS LLSTQPWGSR TQASDLTVNN LMNDDGAPMV  300
QSSAPHGAVA NNFMSNTWSF KGNEAGSSSQ EIPRDLGLGQ LSQSIDSQFS GELELSQQGS  360
RQYMELGSSR AYGSSTHQMH WSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-31771501184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257430.10.0PREDICTED: squamosa promoter-binding-like protein 17
TrEMBLA0A1U7ZUX00.0A0A1U7ZUX0_NELNU; squamosa promoter-binding-like protein 17
STRINGXP_010257430.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.14e-64squamosa promoter binding protein-like 9