PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007882-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 337aa    MW: 38041.5 Da    PI: 7.9698
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007882-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-05260282123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk F  + + ++H +++
  NNU_007882-RA 260 FMCRKCGKAFAVRGDWRTHEKNC 282
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.91E-5172198No hitNo description
Gene3DG3DSA:3.30.160.602.7E-6176195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.67176198IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598176203IPR007087Zinc finger, C2H2
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-6242280No hitNo description
Gene3DG3DSA:3.30.160.608.8E-6247280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808260280IPR007087Zinc finger, C2H2
SMARTSM0035549260280IPR015880Zinc finger, C2H2-like
SMARTSM00355150286309IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTDPYSNFFN GWFNYRSLHH HFSSSTSSSS NPSYTPYAYN YYQNNIISST DRKNSLVHYQ  60
SPPPSPPLRE ALPLLSLSPT RHEEQGASCS AMDEDKNKPK DESFSSIADD ETVTVALHIG  120
LPSPSAADLI SSVSSSTEKT ETEGVTVASG YTTNRLNKGQ YWIPTPSQIL IGPTQFACPV  180
CCKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCYCCAPGCR NNIDHPRAKP  240
LKDFRTLQTH YKRKHGIKPF MCRKCGKAFA VRGDWRTHEK NCGKLWYCIC GSDFKHKRSL  300
KDHIKAFGHG HAAYGIDCFE EEEEPASEIE QDDETSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257283.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-145ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1U7ZSL30.0A0A1U7ZSL3_NELNU; zinc finger protein WIP2-like
STRINGXP_010257283.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-119C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]