PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_007871-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | AP2 | ||||||||
Protein Properties | Length: 549aa MW: 60134.3 Da PI: 7.0869 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.6 | 2.3e-11 | 161 | 217 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g NNU_007871-RA 161 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 217 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.1 | 6e-15 | 262 | 311 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g NNU_007871-RA 262 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 311 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-15 | 161 | 227 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.19E-19 | 161 | 227 | No hit | No description |
Pfam | PF00847 | 9.2E-9 | 161 | 217 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-12 | 162 | 226 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-23 | 162 | 231 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.504 | 162 | 225 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 163 | 174 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.47E-18 | 260 | 320 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.40E-24 | 260 | 319 | No hit | No description |
PROSITE profile | PS51032 | 19.375 | 261 | 319 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-18 | 261 | 319 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-32 | 261 | 325 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-9 | 262 | 311 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 301 | 321 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MGSMNSNSWL AFNISPTPST MPTNNLHASP SQFSLGLVND TVGHSFQIQE WNLMSSHGGE 60 EVPKVADFLG VSKPENELNL ASFNQITATH PNYLLSNDNL QSMQSLEAPS ANSNDPRGIG 120 NNLQSLTLSM GTAKGTESTS SSSAVDVTPR RSMDTFGQRT SIYRGVTRHR WTGRYEAHLW 180 DNSCRREGQS RKGRQGGYDK EEKAARAYDL AALKYWGTST TTNFPISNYE KELEEMKNMT 240 RQEFVASLRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTEEEAAE 300 AYDIAAIKFR GLNAVTNFDM NRYDVKSILE SSTLPIGNGA AKRLKETKAI ESSRNREEIR 360 TRSSSFYGTS SSNFQGYPLL QPIEQAQPQT LLALQNQLSS PQYGGHDSQF HQNYLQLHQQ 420 PTSLFNAAGQ ESQFNQSYLS SHPAFLHGMM NMGQPTALPV MENNGGSLAT NYNGNVGTGV 480 SYNGGGYLCN GIMMAPNSAT VHGGGIGPET GAGLVKVDYD EMSSAGYGGW TADSVQNPNA 540 GVFSMWDDN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010257262.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A1U7ZUH0 | 0.0 | A0A1U7ZUH0_NELNU; AP2-like ethylene-responsive transcription factor PLT2 | ||||
STRING | XP_010257262.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |