PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_007473-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | bHLH | ||||||||
Protein Properties | Length: 139aa MW: 15696.2 Da PI: 9.816 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.4 | 2.2e-07 | 16 | 60 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + + r+RR++i ++ +eL +l+P + K++ ae+ + A +Y+k Lq NNU_007473-RA 16 SVAARQRRRKITEKTQELGKLIPGgN------KMTTAEMFQAAFKYVKFLQ 60 5677*******************955......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.258 | 10 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.55E-12 | 12 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.46E-8 | 13 | 63 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-10 | 13 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-9 | 16 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-5 | 17 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MDDKKKANRG NMSTQSVAAR QRRRKITEKT QELGKLIPGG NKMTTAEMFQ AAFKYVKFLQ 60 AQVGILEFMG SIFQETGKDQ FHIEKLQVLV SPTIQEKLYL EEKCLVPLGS VQTIAKDHDI 120 QSNPLISEGL KLFGQSEHL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 24 | KKKANRGNMSTQSVAARQRRRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010257106.1 | 5e-99 | PREDICTED: transcription factor bHLH53-like | ||||
Swissprot | Q84RD0 | 3e-27 | BH053_ARATH; Transcription factor bHLH53 | ||||
TrEMBL | A0A1U7ZXT4 | 1e-97 | A0A1U7ZXT4_NELNU; transcription factor bHLH53-like | ||||
STRING | XP_010257106.1 | 2e-98 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 1e-29 | bHLH family protein |
Publications ? help Back to Top | |||
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