PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_007422-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

TCP

Protein Properties

Length: 531aa MW: 53950.4 Da PI: 7.675

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_007422-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.9	2.9e-41	123	230	2	115
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ NNU_007422-RA 123 TTTKRSSKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSSLSAP-------A 211 5789*****************************************************************9997777777777733333.......3 PP TCP 97 skksqksaasalnlakesr 115 sk++++s + al+la++ + NNU_007422-RA 212 SKSAPHSFHGALALAHHPH 230 3333444444444444333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-38	128	222	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.418	129	183	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MESTTQSQGS KQQQQQQQQQ QSSPLQLVPF ESRSGPGPGP GPGPGPFMGS ISIQAGAGSG 60 GGGAGGGSSP NSTSTTSTTT TPPQLVDASL AISTKSDASR SGQLVDPSKK QQQQLTIATT 120 TTTTTKRSSK DRHTKVDGRG RRIRMPATCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI 180 IAATGTGTIP ANFSTLNVSL RSSGSSLSAP ASKSAPHSFH GALALAHHPH HYDESGEPAR 240 RLLGGGDSGI SHTAMLGFHH PHHSHLLTAD QIGEALPGGG SGAGGGSGGD AGDNYSRKRF 300 REDLFKEESQ PQQEAGDASS PSASKPLRTG EPGGGSVASA AAAAAAGLIR PSNMMPATAM 360 WAMAPAPSSA GGAFWMLPVT AGSTVPTGVA AAGVGPGPSE PSLWTFPAAG GQYRATTIPT 420 ASGNTLQAPL HFMPRINLSG GIEFQGGRVG ALPLGSMLLQ QPSAAGASQH LGLGVSETNL 480 GMLAALNAYN RGGGGLSMNS EQHQSMDHHQ QVHPQQPQGT DSGDENPNSS Q

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MESTTQSQGS KQQQQQQQQQ QSSPLQLVPF ESRSGPGPGP GPGPGPFMGS ISIQAGAGSG  60
GGGAGGGSSP NSTSTTSTTT TPPQLVDASL AISTKSDASR SGQLVDPSKK QQQQLTIATT  120
TTTTTKRSSK DRHTKVDGRG RRIRMPATCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI  180
IAATGTGTIP ANFSTLNVSL RSSGSSLSAP ASKSAPHSFH GALALAHHPH HYDESGEPAR  240
RLLGGGDSGI SHTAMLGFHH PHHSHLLTAD QIGEALPGGG SGAGGGSGGD AGDNYSRKRF  300
REDLFKEESQ PQQEAGDASS PSASKPLRTG EPGGGSVASA AAAAAAGLIR PSNMMPATAM  360
WAMAPAPSSA GGAFWMLPVT AGSTVPTGVA AAGVGPGPSE PSLWTFPAAG GQYRATTIPT  420
ASGNTLQAPL HFMPRINLSG GIEFQGGRVG ALPLGSMLLQ QPSAAGASQH LGLGVSETNL  480
GMLAALNAYN RGGGGLSMNS EQHQSMDHHQ QVHPQQPQGT DSGDENPNSS Q

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256467.1	0.0	PREDICTED: transcription factor TCP8
Refseq	XP_010256468.1	0.0	PREDICTED: transcription factor TCP8
Refseq	XP_010256469.1	0.0	PREDICTED: transcription factor TCP8
TrEMBL	A0A1U7ZSI5	0.0	A0A1U7ZSI5_NELNU; transcription factor TCP8
STRING	XP_010256467.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	4e-40	TCP family protein