PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007190-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 594aa    MW: 67741.4 Da    PI: 6.5209
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007190-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix491.6e-1596170286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    Wt++e+laL++ar+++e+ +++       We+vs+k++e gf+rsp +Ckek+e+ln     +++++++     + +++ fd+le
  NNU_007190-RA  96 WTEEEILALLRARSSIETGFSDF-----IWEHVSRKLAELGFRRSPDKCKEKFEELNSL---CNNNNNNS--SYTDNYRSFDELE 170
                    ********************998.....9****************************87...55555542..3345678888887 PP
2trihelix91.39.9e-29443528186
       trihelix   1 rWtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW+++ev  Li++r ++ +++++++ +k plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k  +kkr s++s+tcpyf+ql+
  NNU_007190-RA 443 RWPRDEVNSLINLRCNLYSSIEDKEgAKVPLWERISQGMLELGYKRSAKKCKEKWENINKYFRKTKGANKKR-SPDSKTCPYFHQLR 528
                    8*********************854399*******************************************8.78889*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.01292149IPR001005SANT/Myb domain
PfamPF138371.8E-1194171No hitNo description
PROSITE profilePS500906.6995147IPR017877Myb-like domain
CDDcd122031.55E-1396144No hitNo description
SMARTSM007171.7440503IPR001005SANT/Myb domain
PfamPF138373.1E-18442530No hitNo description
CDDcd122032.96E-24442508No hitNo description
PROSITE profilePS500906.655443501IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MFNGAPDQFH EFIASRAALT FPLPLTLPLH VSPPYFSGLD PSPPQHQVFQ SHSLLLHQLH  60
RQSPSVENDE QEEEREMDRT MQLQGLKSTS KLIDPWTEEE ILALLRARSS IETGFSDFIW  120
EHVSRKLAEL GFRRSPDKCK EKFEELNSLC NNNNNNSSYT DNYRSFDELE AVYEGENPKT  180
SAEMEITSEG GGKVTMNLED NSGTETLVNP PVENKYVVKK SKVKKRRRSH KFELLKNFCE  240
EIVNKIMAQQ EELQSKLLEG MERREEERFA REEAWRKQEM VRINREIEIR QHEQAVARDR  300
EATIIELLKK FTTGPSHQNL SLLNEDLYKT TNKQNRLTSP SSSSPAQISE ESTQFNLKEI  360
SSSTNPNLPS SSSQVPVPQN HPDSSVCQTN PIVPSSSTLA MGPQNPNSKT SQNNTVLPTS  420
STAVLPHQNP NSTSSDREDH GKRWPRDEVN SLINLRCNLY SSIEDKEGAK VPLWERISQG  480
MLELGYKRSA KKCKEKWENI NKYFRKTKGA NKKRSPDSKT CPYFHQLRSL YNQGTLIVPS  540
GGPENHSSSP ENRLGSPETR FRSSQCGFNE ATMHDDEGER NQQLGQVPAL DFEY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224229KRRRSH
2486494KRSAKKCKE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097682e-36AP009768.1 Lotus japonicus genomic DNA, clone: LjT40E15, TM1928, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256150.10.0PREDICTED: trihelix transcription factor GTL2-like
RefseqXP_010256151.10.0PREDICTED: trihelix transcription factor GTL2-like
RefseqXP_010256152.10.0PREDICTED: trihelix transcription factor GTL2-like
TrEMBLA0A1U7ZVF90.0A0A1U7ZVF9_NELNU; trihelix transcription factor GTL2-like
STRINGXP_010256150.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-38Trihelix family protein