PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_007045-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NF-YC

Protein Properties

Length: 268aa MW: 29814.8 Da PI: 6.1482

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_007045-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.7	5.2e-56	86	189	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflv NNU_007045-RA 86 QLQAFWSNQyqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLV 181 89****9999******************************************************************************** PP NF-YC 94 divprdel 101 divpr++l NNU_007045-RA 182 DIVPREDL 189 ***987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.71E-33	78	180	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	8.9E-38	100	172	IPR009072	Histone-fold
Pfam	PF00808	1.4E-21	108	171	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDQQAHGQPP VMGVVGGGAQ VPYGTTPYQT NQMIAANPPG SVVTSVGSIQ PAGQPTGFTA 60 SPAQLAPHQL AYQHLHQQQQ QQLQQQLQAF WSNQYQEIEQ TTDFKNHSLP LARIKKIMKA 120 DEDVRMISAE APVVFARACE MFILELTLRS WNHTEENKRR TLQKNDIAAA ITRTDIFDFL 180 VDIVPREDLK DEVLASMPRG TLPVGGPADP LPYYYMPQHS PQVGTPGMIM GKPVVDQALY 240 GQQPRPYMAQ QIWPQPPQQQ QQQPPSDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-63	94	186	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	164	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269\|PubMed:25105952}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010255903.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-9-like
Refseq	XP_010255904.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-9-like
Refseq	XP_010255906.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-9-like
Refseq	XP_010255907.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-9-like
Refseq	XP_019053141.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-9-like
Refseq	XP_019053142.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-9-like
Refseq	XP_019053143.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-9-like
Swissprot	Q8L4B2	1e-89	NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBL	A0A1U8A2K9	0.0	A0A1U8A2K9_NELNU; nuclear transcription factor Y subunit C-9-like
STRING	XP_010255903.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.4	6e-84	nuclear factor Y, subunit C9

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714] Bi C,Ma Y,Wang XF,Zhang DP Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis. Plant Mol. Biol., 2017. 95(4-5): p. 425-439 [PMID:28924726] Liu X, et al. Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering. Plant Physiol., 2018. 177(1): p. 105-114 [PMID:29599268]