PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_006992-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

GRF

Protein Properties

Length: 355aa MW: 39779.2 Da PI: 8.7565

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_006992-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.9	4.8e-25	76	120	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ NNU_006992-RA 76 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVET 120 79****************************************997 PP
2	QLQ	61.2	2.9e-21	15	50	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+l++KyL+a++PvPpeL+ +i+k NNU_006992-RA 15 PFTALQWQELEHQALIFKYLMAGLPVPPELVHPIRK 50 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.3E-11	14	50	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.8E-17	15	49	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.031	15	50	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.448	76	120	IPR014977	WRC domain
Pfam	PF08879	4.2E-21	77	119	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MNSTSALTAT GVRPPFTALQ WQELEHQALI FKYLMAGLPV PPELVHPIRK SFESMSARFF 60 HHPSMGYCSF YGKKADPEPG RCRRTDGKKW RCSKDAYPDS KYCERHMHRG RNRSRKPVET 120 QTISQSSSTV TSLTATATGS SVGSGSFQNL PLHSISNPQG ACSGNSTPLQ IEPISYGIGN 180 KDYRYLYRSR YLHGLKPEAD EHSFFSEASG SVRGLGMDSS LDSSWRLMPS RVSSFPPSKM 240 RNGSIFQSDY PQMHSMQDLG HATVTATTFS KQQQQQQQQQ HCFFGSEFAS AEPVKQEGQS 300 LRPFFDEWPK TRESWSDLED ERSNRTSFST TQLSISIPMA SSDFSATSSR SPNDD

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MNSTSALTAT GVRPPFTALQ WQELEHQALI FKYLMAGLPV PPELVHPIRK SFESMSARFF  60
HHPSMGYCSF YGKKADPEPG RCRRTDGKKW RCSKDAYPDS KYCERHMHRG RNRSRKPVET  120
QTISQSSSTV TSLTATATGS SVGSGSFQNL PLHSISNPQG ACSGNSTPLQ IEPISYGIGN  180
KDYRYLYRSR YLHGLKPEAD EHSFFSEASG SVRGLGMDSS LDSSWRLMPS RVSSFPPSKM  240
RNGSIFQSDY PQMHSMQDLG HATVTATTFS KQQQQQQQQQ HCFFGSEFAS AEPVKQEGQS  300
LRPFFDEWPK TRESWSDLED ERSNRTSFST TQLSISIPMA SSDFSATSSR SPNDD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010255823.1	0.0	PREDICTED: growth-regulating factor 4-like
Swissprot	Q6AWY6	1e-102	GRF3_ORYSJ; Growth-regulating factor 3
TrEMBL	A0A1U7ZUK0	0.0	A0A1U7ZUK0_NELNU; growth-regulating factor 4-like
STRING	XP_010255823.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	6e-48	growth-regulating factor 5