PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_006850-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 406aa MW: 42855.3 Da PI: 5.4995 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.3 | 9.2e-37 | 123 | 216 | 2 | 87 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsss 87 +g++ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ + ss s +++ ++ NNU_006850-RA 123 PGRRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsvggtlkiPTTSSTSDGDTTKK 216 58999***********************************************************888884442222222111111111111111 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.9E-30 | 128 | 214 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.141 | 129 | 183 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 406 aa Download sequence Send to blast |
MASIQKQEIE EEDERGTTDL TMNGGGGEVP VDNGNNVEDK MESSDPSTTE SEPPPPATSA 60 PSQPSSTAVP LVSLKEEPTE TEPELEEQPP PIGVVPVAMQ MQMQMPMSMP MPMPVQIRRT 120 AVPGRRASTK DRHTKVEGRG RRIRMPATCA ARIFQLTREL GHKSDGETIR WLLEHAEPAI 180 IAATGTGTVP AIAMSVGGTL KIPTTSSTSD GDTTKKKRKR SASSEYYEVN DGVSISSGLA 240 PIGATAVAAA PQGLVPMWAV SSGGRVIPSN AVAAGTFWMI PPTTAIAGPS NQPQLWTFPP 300 AGTPLINISA RPISSFISAM QPGISIATPV EVQAPSCVSN NATTSAVSST GAKAAKTSTM 360 APSTSSTTTT QMLRDFSLEI YDKQELQFMG RSANNRQHDQ TTSSKQ |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 215 | 220 | KKRKRS |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010255575.1 | 0.0 | PREDICTED: transcription factor TCP9 | ||||
Swissprot | O64647 | 3e-79 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A1U7ZTX9 | 0.0 | A0A1U7ZTX9_NELNU; transcription factor TCP9 | ||||
STRING | XP_010255575.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45680.1 | 2e-62 | TCP family protein |