PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006461-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 549aa    MW: 61261.4 Da    PI: 6.1465
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006461-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.66.2e-911875463374
           GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++L+++A +++s++ + a ++Larl+++ + p g+p+qR+a+yf+eAL + l++     ++ + +s +s ++ + ++ a+k++ e+sP+++f+++t
  NNU_006461-RA 187 DQLFQAAGCLESNESQSALTILARLNQRlQFPMGKPLQRAAFYFKEALLSLLTG-----SNRIDCSLSS-SEIVYKIRAYKALWEISPVVQFANFT 276
                    68*************************9899***********************.....8888999887.689999******************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLa..sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                    aNqa+ eav+g+  +HiiDf+i+ G+QW++++q++a  sR+   +p slRiT+v+++e  s  e + ++++L +fA+elg++fe+++++ + +e +
  NNU_006461-RA 277 ANQALFEAVDGAMFIHIIDFEIGLGGQWASFMQEIAsnSRSrnVPPSSLRITAVVPEE--SFPEANLIKDNLCQFARELGIRFEIDFVIIRVFEVI 370
                    ************************************55344536677*********66..8899999***************************** PP

           GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++++++ +gE++a+nl+  ++r l+ s s+++    +L+++ ++sP+++v+v+ +   d+ ++sF + f+ ale+y+++++sl+a+  r  +  +
  NNU_006461-RA 371 LFDSIKCLNGEMTAINLSPTIFRYLNTSSSIPE----FLRVLSRMSPQIIVFVDADgcRDTATPSFRRNFIGALEFYTSVLESLDAGNTRGMDVVR 462
                    *************************77777777....*******************53345888********************99999999**** PP

           GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    k+E+ ll+++   +v ++  +       ++ W+e +  + ++pv+lse++++qa++l+r+ +++g+rv +++ +++l+W++r+L+++SaWr
  NNU_006461-RA 463 KIEKYLLRPKMLAAVDAARYR-------MAPWEELFALSALRPVRLSEFTETQADCLVRRWQVRGFRVAKRESTMLLCWQGRELLATSAWR 546
                    **********99999877665.......88************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.641159526IPR005202Transcription factor GRAS
PfamPF035142.2E-88187546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MKSPVNIPTN HHFLHQRSPS CNGSTAENNT FNQPAVSSTS CYEPTSVLDL RRSSSPVAAV  60
PDSFNPVPAF SGVSSEEPSF QWDGHVLPLS SDDWDSMMWA LEEKDNSAPL SKSLPQFGPH  120
GPQSPNFSHL TAPDSFFGSS PHSVPAFNHP SAASWNHSPT YFNLSNNFHQ IGSNGGEGIE  180
FDCSQLDQLF QAAGCLESNE SQSALTILAR LNQRLQFPMG KPLQRAAFYF KEALLSLLTG  240
SNRIDCSLSS SEIVYKIRAY KALWEISPVV QFANFTANQA LFEAVDGAMF IHIIDFEIGL  300
GGQWASFMQE IASNSRSRNV PPSSLRITAV VPEESFPEAN LIKDNLCQFA RELGIRFEID  360
FVIIRVFEVI LFDSIKCLNG EMTAINLSPT IFRYLNTSSS IPEFLRVLSR MSPQIIVFVD  420
ADGCRDTATP SFRRNFIGAL EFYTSVLESL DAGNTRGMDV VRKIEKYLLR PKMLAAVDAA  480
RYRMAPWEEL FALSALRPVR LSEFTETQAD CLVRRWQVRG FRVAKRESTM LLCWQGRELL  540
ATSAWRSGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3022054637375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255200.10.0PREDICTED: scarecrow-like protein 15
TrEMBLA0A1U7ZT000.0A0A1U7ZT00_NELNU; scarecrow-like protein 15
STRINGXP_010255200.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-119GRAS family protein