PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006246-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Dof
Protein Properties Length: 350aa    MW: 37611.4 Da    PI: 8.6499
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006246-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.77e-403191262
         zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                   +e+ lkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+++
  NNU_006246-RA 31 PEQPLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKRTK 91
                   68899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-272489IPR003851Zinc finger, Dof-type
PfamPF027016.3E-333389IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5063589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MISPDNIPAN PPTNDDDQNT GSRKTASLRP PEQPLKCPRC DSPNTKFCYY NNYSLTQPRH  60
FCKTCRRYWT KGGALRNVPI GGGCRKNKRT KSGSRLSGDT KDSAASSDTG GMKFFHGLSP  120
VAMDFQLGSG LPFSRFHSST AGGAYNNQFL SYGDISSTAA TTAAATNPSC FNIDEVAANS  180
GSLMGFNYHA PSVSRQGESG GFKFSGGIQE MGSMNVHSSL ASSIESLSSI NQDLHWKLQQ  240
QRLAMLFGGE NQKESVVSSL PTALLENQAQ KPQPISFQNL DVSKPEVSGV RNPTKSGVSG  300
SATTTTEWFF DNSYTQTATT TTAANSNVNT SSSWNGTQAW TDLHQYSGLP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254593.10.0PREDICTED: dof zinc finger protein DOF5.7
TrEMBLA0A1U7ZRG10.0A0A1U7ZRG1_NELNU; dof zinc finger protein DOF5.7
STRINGXP_010254593.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.11e-53Dof family protein