PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006236-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 308aa    MW: 33937.9 Da    PI: 4.7869
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006236-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA481.7e-15155191135
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  NNU_006236-RA 155 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANKGT 191
                    *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062031.3E-1479120IPR010402CCT domain
PROSITE profilePS5101712.70979121IPR010402CCT domain
SMARTSM004015.0E-9149200IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-10152196No hitNo description
Gene3DG3DSA:3.30.50.101.4E-12153192IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.82E-13154193No hitNo description
PfamPF003202.0E-13155191IPR000679Zinc finger, GATA-type
PROSITE patternPS003440155182IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDDVDDVQVN SGNPVDHGLA MVSRTSELTL SFEGEVYVQA VLLLLGGRDI PTGVPSIELS  60
YQSNRGVVDI PRRSNLSRRI ASLVRFREKR KERNFDKKIR YNVRKEVAQR MHRKNGQFAS  120
LKESYKEGLA ASGSWDPSQG QDDGTPRPEI VLRRCQHCGI SEKSTPAMRR GPAGPRSLCN  180
ACGLMWANKG TPCETKVLPI EAENPSTNRD EQVTLKDLPR ITTGSENPLV NQDDQGSPEE  240
IKPLAVEIGN PSVDQVEQVC SRVVELIENL DDLANASEIE IPSNLDEQPD MGSDGQGIIT  300
SNGHEIEP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254580.10.0PREDICTED: GATA transcription factor 28 isoform X3
SwissprotQ8H1G05e-61GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A1U7ZMR30.0A0A1U7ZMR3_NELNU; GATA transcription factor 28 isoform X3
STRINGXP_010254577.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-63ZIM-LIKE 2