PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006235-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 323aa    MW: 35015.3 Da    PI: 6.7694
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006235-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.61.1e-15220254133
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                    C +Cgt++  Tp++Rrgp g++tLCnaCGl+++ k
  NNU_006235-RA 220 CLHCGTSSksTPMMRRGPAGPRTLCNACGLMWANK 254
                    99******************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.9E-1085120IPR010399Tify domain
PROSITE profilePS5132014.00585120IPR010399Tify domain
PfamPF062005.7E-1291119IPR010399Tify domain
PfamPF062033.4E-16151193IPR010402CCT domain
PROSITE profilePS5101713.245151193IPR010402CCT domain
SuperFamilySSF577162.8E-10213254No hitNo description
SMARTSM004011.7E-5214266IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-13219254IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440220247IPR000679Zinc finger, GATA-type
CDDcd002021.27E-11220270No hitNo description
PfamPF003202.6E-13220254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MPETNSRSPI YGRANRMQSM NIPNQIEAED GSAVGDSIDN PHIRYEAHTL DDGGIGGTVE  60
VMDTVDEVPA DSAFLSGANF VLPSRGEGMD QLTLSFQGEV YVFDAVSPEK VQAVLLLLGG  120
YEVPSAMHGV PTSQPQKGLV AYPRRSSLTQ RAASLSRFRE KRKERCFDKK IRYTVRKEVA  180
LRMQRKKGQF TSSKVSSDEM GSSSGTPGSG QEDLQQETLC LHCGTSSKST PMMRRGPAGP  240
RTLCNACGLM WANKVGVPIG DFKRSFEGFD CWSPGSSCCE PNWTGMYHRN VLAIESAVGT  300
TREITAEVVT SSNGDNSTVT AAH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254576.10.0PREDICTED: GATA transcription factor 24
SwissprotQ8GXL73e-75GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1U7ZZA10.0A0A1U7ZZA1_NELNU; GATA transcription factor 24
STRINGXP_010254576.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-79ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]