PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_006004-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Trihelix

Protein Properties

Length: 394aa MW: 45347.8 Da PI: 4.2091

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_006004-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.3	2.6e-15	155	239	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++ + +L++a ++ +l+r++l+ W ev++k+ +e r+ +qC+++++ l+k+ykk+k + t +++s+++yf++++ NNU_006004-RA 155 WTEHATFVLLDAWGDRFLQLGRKSLRSDEWHEVANKVsEESNTIRTDTQCRNRLDTLKKKYKKEKMKLAE-TGNTTSKWVYFKKMD 239 ***********************************55666788********************9.578888******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.0E-21	154	241	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MDDTEDDARY PPNPYPGNHH QSYGSSHRPK LPVRNASYPQ TVGNEYGDED EEEEEEEEEE 60 EEEEEEEEEE AGVQRVTEEA EEDEDEEEED DDDEDDDDGG NYRRRIEVDE ESERHRKKRK 120 LKNLGYEFAP RIAAPSAAAA APKPSFGGRN SPADWTEHAT FVLLDAWGDR FLQLGRKSLR 180 SDEWHEVANK VSEESNTIRT DTQCRNRLDT LKKKYKKEKM KLAETGNTTS KWVYFKKMDM 240 LMTSSARQPG LSCGLDSGEY VFMNPRVYLN RANGLDEMRD SPGNSESSEG DEDDSDGLPP 300 NRPRFGDDTG GSSSFRLLAD SIQKFGEIYE KIENSKRQQM LELEKMRMEF HRDLELQKRQ 360 ILERAQAEIA KIRQGDRDDD DEDDIDVSTE NISG

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MDDTEDDARY PPNPYPGNHH QSYGSSHRPK LPVRNASYPQ TVGNEYGDED EEEEEEEEEE  60
EEEEEEEEEE AGVQRVTEEA EEDEDEEEED DDDEDDDDGG NYRRRIEVDE ESERHRKKRK  120
LKNLGYEFAP RIAAPSAAAA APKPSFGGRN SPADWTEHAT FVLLDAWGDR FLQLGRKSLR  180
SDEWHEVANK VSEESNTIRT DTQCRNRLDT LKKKYKKEKM KLAETGNTTS KWVYFKKMDM  240
LMTSSARQPG LSCGLDSGEY VFMNPRVYLN RANGLDEMRD SPGNSESSEG DEDDSDGLPP  300
NRPRFGDDTG GSSSFRLLAD SIQKFGEIYE KIENSKRQQM LELEKMRMEF HRDLELQKRQ  360
ILERAQAEIA KIRQGDRDDD DEDDIDVSTE NISG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	119	RRRIEVDEESERHRKKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010254158.1	0.0	PREDICTED: trihelix transcription factor ASIL2
Refseq	XP_010254159.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A1U7ZZK6	0.0	A0A1U7ZZK6_NELNU; trihelix transcription factor ASIL2
STRING	XP_010254158.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-68	Trihelix family protein