PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_005975-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | HSF | ||||||||
Protein Properties | Length: 322aa MW: 36466.4 Da PI: 8.8372 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.8 | 5.6e-36 | 10 | 102 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 F+ k+y++++d++++++i w + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+h+ F +g+k+ll++i NNU_005975-RA 10 FVLKTYQMVNDPATDSVIVWGRANNSFIVIDPIDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFAHELFLRGQKQLLRNI 96 9********************999*****************************************999.........******************* PP XXXXXX CS HSF_DNA-bind 98 krkkse 103 r+ks+ NNU_005975-RA 97 VRRKSS 102 ***987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 9.8E-54 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.09E-33 | 6 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.5E-38 | 7 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.3E-18 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 9.0E-31 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.3E-18 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 49 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.3E-18 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEAFNPVAPF VLKTYQMVND PATDSVIVWG RANNSFIVID PIDFSQRILP AYFKHNNFSS 60 FVRQLNTYGF RKVDPDKWEF AHELFLRGQK QLLRNIVRRK SSRNQYLMNQ PKQENGEERE 120 EEEEILMMEI GRLKQEQKAI EEELQGMNRR LQVTERRPQQ LLAFLFKVVE DPDLIGRIMQ 180 EKDTAKLVEA KKKRLISSAP SSSSAPTKTK MKKIEEVVQH GKAATPVPLQ GVGYCPWTTS 240 NTWPWLTGGP YLSQTPIVTP SSFTLTGVSS PSASGSATAT AMNSYQTDDS REYSDQMGSL 300 PEMEGSVQKP PPYPFSLFGG GF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-27 | 7 | 102 | 17 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010254125.1 | 0.0 | PREDICTED: heat stress transcription factor C-1 | ||||
TrEMBL | A0A1U7ZLL2 | 0.0 | A0A1U7ZLL2_NELNU; heat stress transcription factor C-1 | ||||
STRING | XP_010254125.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 2e-76 | heat shock transcription factor C1 |