PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005712-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARF
Protein Properties Length: 701aa    MW: 76797.7 Da    PI: 6.917
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005712-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37.2e-24122223199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + ++
  NNU_005712-RA 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RAEN 213
                    89****************************996555555..8999*********************************************..4499 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    +el+v+++r+
  NNU_005712-RA 214 GELCVGIRRA 223
                    99******97 PP
2Auxin_resp118.94.1e-39291374183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    aa+ a++++ FevvY+Prast+eF+vk++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  NNU_005712-RA 291 AATLAANGQSFEVVYYPRASTPEFCVKASAVKAAMRIQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 374
                    68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-37113226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-28120228IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-21121222No hitNo description
PfamPF023625.0E-22122223IPR003340B3 DNA binding domain
SMARTSM010192.7E-22122224IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084122224IPR003340B3 DNA binding domain
PfamPF065073.6E-34291374IPR010525Auxin response factor
PROSITE profilePS5174519.971615695IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MITFTDSVKE PMKETEKCLD SQLWHACAGG MVQMPSINSK VFYFPQGQAE HAHGNVDFGN  60
SPRIPPLILC RVAAVKYLAD PETDEVYAKI RLVPLRNNEP DYDDDGVLGS NGSDVAEKPA  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVLAKDVHGE VWKFRHIYRG  180
TPRRHLLTTG WSTFVNQKKL IAGDSIVFLR AENGELCVGI RRAKRGVGGG PESLSGWNPA  240
AGNCVSPYGG FSVFLREDEN KLMRNVNGGN SNSGVGLRTR GRVRAESVIE AATLAANGQS  300
FEVVYYPRAS TPEFCVKASA VKAAMRIQWC PGMRFKMAFE TEDSSRISWF MGTISSVQVA  360
DPIRWPNSPW RLLQVTWDEP DLLQNVKCVS PWLVELVSNM PAIHLSPFSP PRKKFRLPQH  420
PDFPLDSQFQ IPSFSGNPLG PSSPLCCLSD NTPAGIQGAR HAQFGISLSD LHLNKLQSGL  480
FPASFQRLDN TTPPSKINNG LIRGNPNGSE NISCLLTIGS STQSSRKSDG RKSPGFLLFG  540
QPILTEQQIS LSCSGETVSP VLTGNSSSEG NNQDKATNFS DGSGSALNQL GPLDNSCEGF  600
PWYKERPTTE IGLETGHCKV FMESEDVGRT LDLTVLGSYE ELYRRLANMF GIERSEMLSR  660
VLYQDATGAV KHTGDEPFSE FMKTARRLTI LMDSGSDNIG R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-771939551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253698.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1U7ZKL20.0A0A1U7ZKL2_NELNU; Auxin response factor
STRINGXP_010253698.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]