PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_005654-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB

Protein Properties

Length: 1008aa MW: 110096 Da PI: 4.9738

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_005654-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.3	1.8e-08	38	79	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT E e++ + + +G++ +k+I++ + ++t +c+++++k NNU_005654-RA 38 PWTSKEKEIFMEMLATFGKD-FKKISSFLD-HKTTADCIEFYYK 79 8***************99.*****.*********99 PP
2	Myb_DNA-binding	31.1	5.4e-10	258	298	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++a +++G + +++I+r++ +R++ qc+ ++ NNU_005654-RA 258 DWTDEEKSVFIQALRLYGRD-FAKISRYVR-TRSRDQCRIFFS 298 6***************77.*****.******8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.89E-14	22	84	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.616	34	85	IPR017884	SANT domain
SMART	SM00717	6.1E-8	35	83	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-5	37	82	IPR009057	Homeodomain-like
Pfam	PF00249	2.7E-6	38	80	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	14.244	254	305	IPR017884	SANT domain
SMART	SM00717	4.2E-9	255	303	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-5	258	299	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.34E-10	258	305	IPR009057	Homeodomain-like
Pfam	PF00249	9.3E-9	258	297	IPR001005	SANT/Myb domain
CDD	cd00167	9.59E-8	259	297	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1008 aa Download sequence Send to blast
MPALLLDEKE KRLSSLVTSN GLVEDPCAVE KERAMINPWT SKEKEIFMEM LATFGKDFKK 60 ISSFLDHKTT ADCIEFYYKN QKSESFEKIK KKLELRKQEQ SFPSNTYLVT SGKKWNRDGN 120 AASLDLLGAA SVIAATADAN FKTKQNCGGK LFLGGYNDHS LSQGDDCNLE GSSSVDILGN 180 EREAAAADVL VGICGALSSE AMSSCVTSSI DPGEGCQEWK RQKVSSVKDR LLTPEVSQNI 240 DDEETCSDES CGELDSVDWT DEEKSVFIQA LRLYGRDFAK ISRYVRTRSR DQCRIFFSKA 300 RKCLGLDVLY PGTVNEEMPG SDTNGGRSDT EDACLVELES AICSNQSCSK MEVDLASSVT 360 NMNGGVSLQV EPSHLQIDLD RSGEKHGIET QNREASEMKV ETMVPDECRA GAESAKVLDA 420 DNNSIGPEVV NRDDVNVDVV LNSEPNVQLS GSVALADERE IVKEPHTDKV IVPKEEPVSA 480 CEQEEVGQFK SIAAADLHPL PCSDCEDSKV DLDKRQEVSE KVLIDGQDPA NGIDRNSCTG 540 TSCIFTTESS AKREGVNPAY TLPATYPHQI PLELLSSIQK PQVVSWQQKE NVPSVSVGLD 600 SSVHCKDQLK QCRASSSTLD FVVHGDKQQQ KSSSADVFQQ ILLGHESLNR VEHSQILKGY 660 PLQVLNKNAK NTDVDTKSGE ESSKVQSFSK MERKSQHSQY MQELYHEKCN SSRFTHSVAE 720 LPLLPKGQEP SPIDHPRPHS WSSSDTEEQS RRTGDVKLFG QILSHPTPAS KRNSSSPENN 780 ENGASSKLGS SSFNLKSTSN HAVDGVAVSI KLDNSNYSGL EDFPARSHGF WDGSRIQTGL 840 SSQPDSAMLL AKYPAAFGDY SAPSCRVGKQ PVPVVKRNDL NMGCVSVFPT KDLDGIGGLA 900 DYQAYRSYDG TKLQPFTTVD VKGHGIFSEL EKRNGFEVTS FQQQGRSVVG GGILVGGNCP 960 GVSDPVAAIK MHYATSERQR YSGQAQASSS SSTREDESWH GGGDLGRR

Sequence ? help Back to Top

Protein Sequence Length: 1008 aa Download sequence Send to blast

MPALLLDEKE KRLSSLVTSN GLVEDPCAVE KERAMINPWT SKEKEIFMEM LATFGKDFKK  60
ISSFLDHKTT ADCIEFYYKN QKSESFEKIK KKLELRKQEQ SFPSNTYLVT SGKKWNRDGN  120
AASLDLLGAA SVIAATADAN FKTKQNCGGK LFLGGYNDHS LSQGDDCNLE GSSSVDILGN  180
EREAAAADVL VGICGALSSE AMSSCVTSSI DPGEGCQEWK RQKVSSVKDR LLTPEVSQNI  240
DDEETCSDES CGELDSVDWT DEEKSVFIQA LRLYGRDFAK ISRYVRTRSR DQCRIFFSKA  300
RKCLGLDVLY PGTVNEEMPG SDTNGGRSDT EDACLVELES AICSNQSCSK MEVDLASSVT  360
NMNGGVSLQV EPSHLQIDLD RSGEKHGIET QNREASEMKV ETMVPDECRA GAESAKVLDA  420
DNNSIGPEVV NRDDVNVDVV LNSEPNVQLS GSVALADERE IVKEPHTDKV IVPKEEPVSA  480
CEQEEVGQFK SIAAADLHPL PCSDCEDSKV DLDKRQEVSE KVLIDGQDPA NGIDRNSCTG  540
TSCIFTTESS AKREGVNPAY TLPATYPHQI PLELLSSIQK PQVVSWQQKE NVPSVSVGLD  600
SSVHCKDQLK QCRASSSTLD FVVHGDKQQQ KSSSADVFQQ ILLGHESLNR VEHSQILKGY  660
PLQVLNKNAK NTDVDTKSGE ESSKVQSFSK MERKSQHSQY MQELYHEKCN SSRFTHSVAE  720
LPLLPKGQEP SPIDHPRPHS WSSSDTEEQS RRTGDVKLFG QILSHPTPAS KRNSSSPENN  780
ENGASSKLGS SSFNLKSTSN HAVDGVAVSI KLDNSNYSGL EDFPARSHGF WDGSRIQTGL  840
SSQPDSAMLL AKYPAAFGDY SAPSCRVGKQ PVPVVKRNDL NMGCVSVFPT KDLDGIGGLA  900
DYQAYRSYDG TKLQPFTTVD VKGHGIFSEL EKRNGFEVTS FQQQGRSVVG GGILVGGNCP  960
GVSDPVAAIK MHYATSERQR YSGQAQASSS SSTREDESWH GGGDLGRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	1e-15	1	87	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	1e-15	1	87	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010253596.1	0.0	PREDICTED: uncharacterized protein LOC104594807 isoform X4
TrEMBL	A0A1U7ZIA1	0.0	A0A1U7ZIA1_NELNU; uncharacterized protein LOC104594807 isoform X4
STRING	XP_010253593.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	3e-90	MYB family protein