PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_005609-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 348aa MW: 38077 Da PI: 7.8361

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_005609-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	129.2	1.1e-40	86	147	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rknk+sss NNU_005609-RA 86 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNKRSSS 147 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	75	139	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.0E-34	88	144	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.618	90	144	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	92	128	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
AKHIDHLVRG VIITLSLSLF LCFIYLGVHH LLLSSTLHDC ALLKSGLHFA WMDHSNAQHQ 60 AMATHSLEDM LICPKPQQEK RVRPQPEQAL KCPRCDSTNT KFCYYNNYSL SQPRYFCKAC 120 RRYWTKGGSL RNVPVGGGCR KNKRSSSSKK TQDQTLTTTN SNPLPTHPLL PYDSNDLTLA 180 FARLREQPTR QLSLDNHDAS ILGNLSTTNC DILENLTTTT TTSTTTISPG FLDTLRSGFL 240 EAPSGINSLY YGLGSGNMGE IASGGGDGCG DVMLPYEEML GATTTTAATI TTTTKQEFCK 300 GRDGENRALW GFPWQLGGDG SMGGVDSGRE CWNGLGSSWH GLVNSPLM

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

AKHIDHLVRG VIITLSLSLF LCFIYLGVHH LLLSSTLHDC ALLKSGLHFA WMDHSNAQHQ  60
AMATHSLEDM LICPKPQQEK RVRPQPEQAL KCPRCDSTNT KFCYYNNYSL SQPRYFCKAC  120
RRYWTKGGSL RNVPVGGGCR KNKRSSSSKK TQDQTLTTTN SNPLPTHPLL PYDSNDLTLA  180
FARLREQPTR QLSLDNHDAS ILGNLSTTNC DILENLTTTT TTSTTTISPG FLDTLRSGFL  240
EAPSGINSLY YGLGSGNMGE IASGGGDGCG DVMLPYEEML GATTTTAATI TTTTKQEFCK  300
GRDGENRALW GFPWQLGGDG SMGGVDSGRE CWNGLGSSWH GLVNSPLM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010253518.1	0.0	PREDICTED: dof zinc finger protein DOF3.2-like
TrEMBL	A0A1U7ZI30	0.0	A0A1U7ZI30_NELNU; dof zinc finger protein DOF3.2-like
STRING	XP_010253518.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	4e-33	TARGET OF MONOPTEROS 6