PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005436-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family E2F/DP
Protein Properties Length: 298aa    MW: 33606 Da    PI: 7.0801
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005436-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP73.22.8e-2373150471
        E2F_TDP   4 ksLrlltqkflklleksee.givtlnevakeLvse.............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     +Lr+++     +++k+e  g++t++eva+e+++e             d+kn+rRR+YD+lNVL+aln+++k +k+ei+wkg
  NNU_005436-RA  73 GGLRQFSII---VCKKVECkGRTTYSEVADEIIAEfathnnamsldefDEKNIRRRVYDALNVLMALNIVAK-DKKEIQWKG 150
                    589999988...****9999****************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013723.4E-2670150IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.3E-3871155IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.11E-1873151IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.7E-2074150IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144588.21E-32155253IPR014889Transcription factor DP, C-terminal
SMARTSM011383.8E-41157285IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440747.59E-36157278No hitNo description
PfamPF087812.9E-29158278IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MVVTADVMVS RYTRDFRVVY DQTQSNGGAD VLSAGGYDVT AISSDNMLRS HLNIQQDDAS  60
ATKKKRVSRI VGGGLRQFSI IVCKKVECKG RTTYSEVADE IIAEFATHNN AMSLDEFDEK  120
NIRRRVYDAL NVLMALNIVA KDKKEIQWKG LPTTKVKDLE DLQALRVKLI KRIGNKATYL  180
QELEEQNLML RNQQLHQSGN VPSEGFSLPF ILVQTRPHAT VEIEISEDMQ LVHFDFNSTP  240
FSLHDDAYIL KLIRYHQLGQ AKHFSQDSVA HSSSSSSSAD KSQETTPFHW NSEILGAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3272154992PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253208.10.0PREDICTED: transcription factor-like protein DPA isoform X1
RefseqXP_019052795.10.0PREDICTED: transcription factor-like protein DPA isoform X1
SwissprotQ9FNY27e-90DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1U8Q4300.0A0A1U8Q430_NELNU; transcription factor-like protein DPA isoform X1
STRINGXP_010253208.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-91Transcription factor DP