PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_005431-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 328aa MW: 34649.6 Da PI: 8.8569

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_005431-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6.2e-39	62	122	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e++lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ NNU_005431-RA 62 PEASLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 122 67889*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-29	50	111	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.5E-33	65	120	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	66	120	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	68	104	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MVFSSVPLYP PNWQQQQNHQ SGNSTENPQL PPPPPPPAGG GSGSIRPGSM ADRARLAKLP 60 QPEASLKCPR CESTNTKFCY FNNYSLSQPR HFCKTCRRYW TRGGALRNVP VGGGCRRNKR 120 SKGSSSKSPV TGERQTGAGS TGAISTNSCT TDMIGHIPPP PPPQLPFMTS LHHLTDYTAA 180 DIGLNFGGIQ PPMAATGGGG GTDMDFQIGS NSGAGSSMLS SGGAEQWRLP QVHQFPFLTG 240 LEPHAGLYPF EGEGVEPSAY GGVVSHSQVR TKPSGSGVTQ LASVKMEENH GLNLSRQFLG 300 IPGNDQYLGG NAWTDLSGFN SSSTGHLL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00407	DAP	Transfer from AT3G55370	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010253200.1	0.0	PREDICTED: dof zinc finger protein DOF3.6
TrEMBL	A0A1U7ZXA3	0.0	A0A1U7ZXA3_NELNU; dof zinc finger protein DOF3.6
STRING	XP_010253200.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	1e-46	OBF-binding protein 3