PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_005374-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bZIP

Protein Properties

Length: 295aa MW: 32463.1 Da PI: 6.7254

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_005374-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4e-10	195	247	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + NNU_005374-RA 195 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT 247 9****************************************999877666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-16	191	255	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.691	193	256	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.1E-8	195	249	No hit	No description
Pfam	PF00170	7.9E-9	195	244	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.03E-11	195	246	No hit	No description
CDD	cd14703	3.02E-24	196	245	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MEMLDPGNHN LSNSNSQSAQ KTKATVMLGN SNGSFRSSHH RRAHSEVNFR LPHDLDIVAD 60 PFDAPTASFE EIGSEDDLFC TYMDIEKLGS KIEDCTTGGS KLVDFRIDDG GIVDGRNCMG 120 QNGGAAGGRG DVGVSGAVRS ENSVEEKNVR PRHRHSNSVD GSSILRGESL FGDVMDAKKA 180 MPPDKLAELW TLDPKRAKRI LANRQSAARS KERKARYISE LERKVQTLQT EATTLSAQLT 240 LFQRDTTGLT TENTELKLRL QAMEQQAQLR DGTIVNHTSK LKYSLDNVEG ANWIS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010253091.1	0.0	PREDICTED: transcription factor RF2b isoform X2
Swissprot	O22873	2e-83	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1U7ZMZ0	0.0	A0A1U7ZMZ0_NELNU; transcription factor RF2b isoform X2
STRING	XP_010253090.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-77	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]