PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005173-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 586aa    MW: 64924 Da    PI: 5.8436
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005173-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.82.7e-1392145861374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL++cA+a++++dl+ a++l+a  ++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s+e l+++++++ev+P++kf+++
  NNU_005173-RA 214 LRNLLIACAQAIADDDLSTADWLMAVSRQMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPA---SAELLSYMHILYEVCPYFKFGYM 306
                    689******************************************************************9...9********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN aI ea++ e+++HiiDf+i qG QW++L+qaLa+Rp+gpp++RiTg+++++s   +   l+ +g+rL+++Ae+++vpfef++ +a   +++e
  NNU_005173-RA 307 SANGAIAEALKDERKIHIIDFQIAQGSQWVTLIQALAARPGGPPQIRITGIDDSTSAyaRGGGLHIVGQRLSRLAESCHVPFEFHA-AAMCGSEVE 401
                    *****************************************************998899999************************.899****** PP

           GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                    le+L ++p  gEalaVn++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n+++F+ rf+e+l+yy+a+f+s+++ lpr++++ri+
  NNU_005173-RA 402 LENLCIRPgaGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQECNTNTAPFAPRFIETLNYYTAMFESIDMALPRDDKQRIN 497
                    ********99************************************************************************************** PP

           GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    vE+++l+r++vn++acegaer+erhe l+kWr+r+++aGF+p+pls+ +++++k+ll++++ + y++ee++g+l lgW+d++Lv+++aW+
  NNU_005173-RA 498 VEQHCLARDVVNLIACEGAERVERHELLAKWRSRFTMAGFTPYPLSSLVNATIKTLLENYSTN-YKLEEKDGALHLGWMDQSLVTTCAWK 586
                    *************************************************************76.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.382188567IPR005202Transcription factor GRAS
PfamPF035149.4E-137214586IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MSSQLKSENI SSQKKYQYYS GFPVAGLSQL VGYSSMQTSQ KYRHSVGSHS SYYQPVQEVG  60
SYCLPQNFQN LDHQCSKASS QESNFPIQTS HEQYCTLESS SATGSYTVYS SPSTLSFSPN  120
GSPISQQDSH SYPADPHHSH SPDCTHGSPV SGSCITDEVN DLRHKLRDLE TAMLGPESDI  180
VDSFHENLGG GDDQAPLEIE KWREITEMIS RGDLRNLLIA CAQAIADDDL STADWLMAVS  240
RQMVSVSGEP IQRLGAYMLE GLVARLASSG SSIYKALRCK EPASAELLSY MHILYEVCPY  300
FKFGYMSANG AIAEALKDER KIHIIDFQIA QGSQWVTLIQ ALAARPGGPP QIRITGIDDS  360
TSAYARGGGL HIVGQRLSRL AESCHVPFEF HAAAMCGSEV ELENLCIRPG AGEALAVNFA  420
FMLHHMPDES VSTQNHRDRL LRLVKSLSPK VVTLVEQECN TNTAPFAPRF IETLNYYTAM  480
FESIDMALPR DDKQRINVEQ HCLARDVVNL IACEGAERVE RHELLAKWRS RFTMAGFTPY  540
PLSSLVNATI KTLLENYSTN YKLEEKDGAL HLGWMDQSLV TTCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-632185868375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252695.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1U7ZG380.0A0A1U7ZG38_NELNU; scarecrow-like protein 21
STRINGXP_010252695.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]