PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004968-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARF
Protein Properties Length: 677aa    MW: 75387.5 Da    PI: 6.0069
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004968-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543e-17127209178
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                    f+k+lt sd++++g +++ +++a+++       ++++   ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +g+
  NNU_004968-RA 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQHPP--WQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGE 209
                    99*****************************654444..458***************************************9996 PP
2Auxin_resp104.51.3e-34245327183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    a+ha++t++ F+v+Y+Pr+s+seF+++v+k+++a ++k+svGmRfkm+fe+e+++err+sGt++gv +  +  W + +WrsLk
  NNU_004968-RA 245 ASHAIATGTLFSVFYKPRTSRSEFIISVNKYLEARNHKLSVGMRFKMRFEGEEAPERRFSGTIIGVGENASPWWADTEWRSLK 327
                    789*****************************************************************9999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-37116248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-31123234IPR015300DNA-binding pseudobarrel domain
CDDcd100179.59E-17125219No hitNo description
PfamPF023622.6E-15127209IPR003340B3 DNA binding domain
SMARTSM010193.8E-14127221IPR003340B3 DNA binding domain
PfamPF065071.4E-33245327IPR010525Auxin response factor
PfamPF023094.9E-12541635IPR033389AUX/IAA domain
PROSITE profilePS5174526.402549642IPR000270PB1 domain
SuperFamilySSF542773.99E-12549626No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MEMAALNQSS GGPNSGSSSD LLYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTH  60
QGLDQQMPSF NLPSKILCRV VHVQLRAEPE TDEVYAQITL LPESDQSEVT SPDPPLPEPP  120
RCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ HPPWQELVAT DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SSKRLVAGEN GELRVGVRRL MRQLNNMPSS VISSHSMHLG  240
VLATASHAIA TGTLFSVFYK PRTSRSEFII SVNKYLEARN HKLSVGMRFK MRFEGEEAPE  300
RRFSGTIIGV GENASPWWAD TEWRSLKVQW DEPSSIPRPD RVSPWELEPL VATAPSTSQP  360
VQRNKRARPP VLPPPTSDVS VFGMWKSPVE SSTFSYSGLH RGRDLYPSPN STSLFSSVTK  420
ANSLGFNGNS SPAAVTSNPV NWSNRAEAPA ESVTQAINRE SGEKRQETSS GYRLFGIQLV  480
DNSTLEETSP VVTLSGIGED QPAPSMDADS DRQSQPSNIN RSDNHAVSSE PEKSCLRSPP  540
QEMQSRQTRS CTKVHMQGMA VGRAVDLQRF DCYEDLLRKL EEMFNIEGEL CGLKKKWQVV  600
YTDDEDDMMM VGDDPWHEFI NMARKIFIYT AEEVKRLSAK TKLPGSAEVK PVILDTEAVV  660
GNEDQSSVIG SDESNII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.033501355Auxin response factor 1
4ldw_A0.033501355Auxin response factor 1
4ldw_B0.033501355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252371.10.0PREDICTED: auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A1U7ZF880.0A0A1U7ZF88_NELNU; Auxin response factor
STRINGXP_010252371.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]