PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_004901-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | NAC | ||||||||
Protein Properties | Length: 377aa MW: 42843 Da PI: 7.046 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.2 | 1.7e-49 | 21 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++ NNU_004901-RA 21 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENF 115 79***************************.89***************8778899****************************************** PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +glkktLvfy+g+apkg +t+W+m+eyrl NNU_004901-RA 116 RSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 146 *****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.498 | 20 | 167 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.88E-55 | 20 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-25 | 22 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MAIAAAMSQD DKDDHDHDMV MPGFRFHPTE EELVEFYLRR KVEGKRFNVE LITFLDLYRY 60 DPWELPALAA IGEKEWFFYV PRDRKYRNGD RPNRVTTSGY WKATGADRMI RTENFRSIGL 120 KKTLVFYSGK APKGIRTSWI MNEYRLPQNE TERYQKAEIS LCRVYKRAGV EDHSPLPRSV 180 SSTPAASSSR AIQQTDKKQR GTVVQQRATA SFQALGDHSS PSEMEKLQEA DGSSSTEPAG 240 TVLGLSKPTA YSDIASITSL QAPNPEEEDV TLLSHHSKQV DSLLTAGCTS TLFTCAASMP 300 VTTPVDELHR LVEYQRGYTN QQHHHHHLHT QFLPLPSQPQ NLALNILPNS QLPTFSEKVW 360 EWNPIPDANR DYTSPFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-55 | 22 | 167 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-55 | 22 | 167 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-55 | 22 | 167 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-55 | 22 | 167 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-55 | 22 | 167 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-55 | 22 | 167 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-55 | 22 | 167 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-55 | 22 | 167 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-55 | 22 | 167 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-55 | 22 | 167 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-55 | 22 | 167 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-55 | 22 | 167 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-55 | 22 | 167 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-55 | 22 | 167 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010252261.1 | 0.0 | PREDICTED: NAC domain-containing protein 35 | ||||
Swissprot | Q9ZVH0 | 6e-59 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A1U7ZKQ2 | 0.0 | A0A1U7ZKQ2_NELNU; NAC domain-containing protein 35 | ||||
STRING | XP_010252261.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-107 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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