PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004832-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Dof
Protein Properties Length: 327aa    MW: 34702.5 Da    PI: 8.8469
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004832-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.1e-3963123262
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                    +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  NNU_004832-RA  63 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 123
                    67899*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2751112IPR003851Zinc finger, Dof-type
PfamPF027017.0E-3366121IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.60967121IPR003851Zinc finger, Dof-type
PROSITE patternPS01361069105IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MVFSSVPLYP PNWQQQPNHH QSSSSTENPQ FPPPPPPPAG GGSGSIRPGS VADRARLAKP  60
PQPEAALKCP RCESTNTKFC YFNNYSLSQP RHFCKTCRRY WTRGGALRNV PVGGGCRRNK  120
RSKGSSSKSP VTGERHTGPG STSAIPANSC TTDIIGHIQP TPPLQLPFIS SLHHLTEYAP  180
PDIGLNFSGI HPPVAAAGGG GGTDMDFQIA SYSGGGSSIL SSGSAEQWRL QQVQQFPFLT  240
GLEPSAGLYP FEGESAEPSA YAGGASQLRT KPSGSGVTQL ASVKMEENHG LNLSRQFLGI  300
PGNDQYWGSN AWTDLSGFNS SSNSHLL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252137.10.0PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBLA0A1U7ZGN70.0A0A1U7ZGN7_NELNU; dof zinc finger protein DOF3.6-like
STRINGXP_010252137.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.26e-44OBF-binding protein 3