PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_004517-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bZIP

Protein Properties

Length: 422aa MW: 45348.6 Da PI: 6.5289

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_004517-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	65.7	7.9e-21	278	340	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NRe+ArrsR+RK+ae++eL kv++L+aeN aLk+e+++l++ ++k++ e+ NNU_004517-RA 278 ERELKRQRRKQSNRESARRSRLRKQAETDELVMKVESLTAENIALKSEISRLTQSSEKMRLEN 340 89*********************************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	5.5E-31	31	104	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	9.1E-12	143	250	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.9E-18	272	337	No hit	No description
SMART	SM00338	6.5E-20	278	342	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-18	278	340	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.794	280	343	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.13E-11	281	336	No hit	No description
CDD	cd14702	2.31E-22	283	331	No hit	No description
PROSITE pattern	PS00036	0	285	300	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MERMWKKEWC GDGTLERFLT VRIGLRIQEF EEQTNIHPYP DWAAMQAYYG PGVTLPPPYF 60 NPAVTSGHAP HPYMWGPPQP LMPPYGAPYA AIYPHGGVYA HPSITYGSHP HGPGFPPSPV 120 VSEVMVATPV SVEPPAKSSG SKDRDLMKKL RGLGNGNAEG AAEGATSGLS PSAECGTDGS 180 SDGSDGNTSG GDKTERKRSS DSILSAGSDG KVETPAISMP SAQVNAASSG GAISVAGKTV 240 GIAPSPGMTP IFDFRGLRNG KANTNTVIAP PELWVQDERE LKRQRRKQSN RESARRSRLR 300 KQAETDELVM KVESLTAENI ALKSEISRLT QSSEKMRLEN AALMEKLKDA ELGQTTEVVA 360 NDTEAREDPP VSTENFLSRV NNPASVSIDD RRDTEIHKNS NSGAKLRQLL ESNTRTDAVA 420 AG

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MERMWKKEWC GDGTLERFLT VRIGLRIQEF EEQTNIHPYP DWAAMQAYYG PGVTLPPPYF  60
NPAVTSGHAP HPYMWGPPQP LMPPYGAPYA AIYPHGGVYA HPSITYGSHP HGPGFPPSPV  120
VSEVMVATPV SVEPPAKSSG SKDRDLMKKL RGLGNGNAEG AAEGATSGLS PSAECGTDGS  180
SDGSDGNTSG GDKTERKRSS DSILSAGSDG KVETPAISMP SAQVNAASSG GAISVAGKTV  240
GIAPSPGMTP IFDFRGLRNG KANTNTVIAP PELWVQDERE LKRQRRKQSN RESARRSRLR  300
KQAETDELVM KVESLTAENI ALKSEISRLT QSSEKMRLEN AALMEKLKDA ELGQTTEVVA  360
NDTEAREDPP VSTENFLSRV NNPASVSIDD RRDTEIHKNS NSGAKLRQLL ESNTRTDAVA  420
AG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	294	300	RRSRLRK
2	294	301	RRSRLRKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010251548.1	0.0	PREDICTED: common plant regulatory factor 1 isoform X1
TrEMBL	A0A1U7ZJ02	0.0	A0A1U7ZJ02_NELNU; common plant regulatory factor 1 isoform X1
STRING	XP_010251548.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.1	8e-38	G-box binding factor 3