PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004192-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARR-B
Protein Properties Length: 597aa    MW: 67021.8 Da    PI: 5.6008
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004192-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like772.4e-24200253155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lmkv+ Lt+e+v+SHLQkYRl
  NNU_004192-RA 200 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMKVPWLTRENVASHLQKYRL 253
                    68*******************.9*******************************8 PP
2Response_reg81.42.9e-27191271109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl+vdD+p+ +++l+++l+k  y ev+++  +++al++l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga
  NNU_004192-RA  19 VLVVDDDPTWLKILEKMLKKCSY-EVTTCCLARDALDMLRERKdrFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGA 112
                    89*********************.***************888778**********************6644.8*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     d+l Kp+ ++el++
  NNU_004192-RA 113 CDYLLKPVRMKELRN 127
                    ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.12E-3516140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.3E-4416162No hitNo description
SMARTSM004482.9E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.45318133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.8E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.28E-3020133No hitNo description
SuperFamilySSF466894.57E-17198257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-27198258IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-22200253IPR006447Myb domain, plants
PfamPF002496.5E-7202252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MESGFASPRA DAFPAGLRVL VVDDDPTWLK ILEKMLKKCS YEVTTCCLAR DALDMLRERK  60
DRFDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPV  120
RMKELRNIWQ HVFRKKIHEV KEIENHEIHD DVQMMRSGSE EFDDGHLPSG LDLVSPRKRK  180
DMENKEHEDQ ELSDPSAMKK ARVVWSVDLH QKFVNAVNQI GFDKVGPKKI LDLMKVPWLT  240
RENVASHLQK YRLYLSRLQK QNESKAPFCG TKQSDFTPKD TPGSFGIENS IKMHQNNAAN  300
SSYGYCGNKI LLQNVGSEIH ENDLKGIISF LPITEPRKAL AGDVSNTQKS SNGSRVGLSH  360
SFGSLGPDVN YPTIQSPNCW NTDIPVIQFA QKAKQEKEPY ILLEDNYMHL PPSGPQNQIQ  420
ADGLQSSPPI NSRPVTEKGK VIATEIKPLC TEYGSNHVGD ISRRGQGINL FSVQADKDVA  480
NAQAFGYMPT ATGSSPMRNQ SFDQIYINNW NSLQPSIIPE GGSFLSSSHE DLEPCSLQGG  540
YGYTETVGFN NEEILAYEHL DLTADPPSHL YDGLRFNCDY PCDSMEYPLM DRGLFIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17196258163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251342.10.0PREDICTED: two-component response regulator ORR26-like
TrEMBLA0A1U7ZIJ00.0A0A1U7ZIJ0_NELNU; two-component response regulator ORR26-like
STRINGXP_010251342.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-122response regulator 11