PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_004184-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 31438.5 Da PI: 6.106 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.8 | 4.9e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + + G +W+++++ g+ R++k+c++rw +yl NNU_004184-RA 14 RGPWTIEEDHKLMNFILNNGIQCWRLVPKLAGLMRCGKSCRLRWINYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++ E++++++++ +lG++ W++Ia++++ gRt++++k++w++ NNU_004184-RA 67 RGALSEVEEDQIIQLHSRLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110 788899****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.004 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.59E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-5 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-11 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.38E-4 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.277 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-10 | 71 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MGRKPCCEKI GLKRGPWTIE EDHKLMNFIL NNGIQCWRLV PKLAGLMRCG KSCRLRWINY 60 LRPDLKRGAL SEVEEDQIIQ LHSRLGNRWS KIAAHFPGRT DNEIKNHWNT RIKKRLKIMG 120 LDPVTHKPIE QREKCNSEAE QLSRFHSQRE QQKDLKIEPL DTPGLEDAPL PQMEGEDSFQ 180 PGSDETINVL HGYEMLWEDL DMGMMINPEN NPTNSYSSSF SLEDSFSRST GESSSLQEDS 240 GQCWINNVNY SIPQWDLFHN VDDIFLLKNN Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00510 | DAP | Transfer from AT5G14340 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010250867.1 | 0.0 | PREDICTED: myb-related protein 315-like isoform X1 | ||||
Refseq | XP_010250868.1 | 0.0 | PREDICTED: myb-related protein 315-like isoform X1 | ||||
Refseq | XP_019052558.1 | 0.0 | PREDICTED: myb-related protein 315-like isoform X1 | ||||
Refseq | XP_019052559.1 | 0.0 | PREDICTED: myb-related protein 315-like isoform X1 | ||||
Refseq | XP_019052560.1 | 0.0 | PREDICTED: myb-related protein 315-like isoform X1 | ||||
Refseq | XP_019052561.1 | 0.0 | PREDICTED: myb-related protein 315-like isoform X1 | ||||
TrEMBL | A0A1U7ZRN1 | 0.0 | A0A1U7ZRN1_NELNU; myb-related protein 315-like isoform X1 | ||||
STRING | XP_010250867.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 4e-81 | myb domain protein 40 |