PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_004170-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Trihelix

Protein Properties

Length: 378aa MW: 43243.6 Da PI: 6.4277

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_004170-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.6	1.5e-27	65	146	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++e++ s +++y+++le NNU_004170-RA 65 WVQEETRSLISLRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQERGS---GSAKMSYYKELE 146 ******************************************************************84...55689***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.838	57	121	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.4E-5	58	123	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-5	61	123	IPR001005	SANT/Myb domain
CDD	cd12203	2.76E-29	63	128	No hit	No description
Pfam	PF13837	7.5E-22	64	148	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MYLSEKPRPI DFYKEEGRDM MIEVVGNGGL PLQQQPQQQQ PQMILAESSG EDHEVKAPKK 60 RAETWVQEET RSLISLRREM DSLFNTSKSN KHLWEQISAK MREKGFDRSP TMCTDKWRNL 120 LKEFKKAKHQ ERGSGSAKMS YYKELEELLR DRNKNAAYKS PTLSKVDSYI QFSDKGLEDA 180 SIPFGSVEAT GRSTLNLERR LDHDGHPLAI TTADAVAASG VPPWNWRETP GNGGESHSYG 240 GRVISVKWGE YTRRIGIDGT ADAIKEAIKS AFGLRTRRAF WLEDEDEVVR SLDRDMPLGN 300 YTLHLDEGLT IKVCFYDESG RIPVRTEEKT LYTEEDFRDF LTRRGWTGLR ELSGFRSVDT 360 LDDLRPCAMY QGVRLLGD

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MYLSEKPRPI DFYKEEGRDM MIEVVGNGGL PLQQQPQQQQ PQMILAESSG EDHEVKAPKK  60
RAETWVQEET RSLISLRREM DSLFNTSKSN KHLWEQISAK MREKGFDRSP TMCTDKWRNL  120
LKEFKKAKHQ ERGSGSAKMS YYKELEELLR DRNKNAAYKS PTLSKVDSYI QFSDKGLEDA  180
SIPFGSVEAT GRSTLNLERR LDHDGHPLAI TTADAVAASG VPPWNWRETP GNGGESHSYG  240
GRVISVKWGE YTRRIGIDGT ADAIKEAIKS AFGLRTRRAF WLEDEDEVVR SLDRDMPLGN  300
YTLHLDEGLT IKVCFYDESG RIPVRTEEKT LYTEEDFRDF LTRRGWTGLR ELSGFRSVDT  360
LDDLRPCAMY QGVRLLGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	7e-49	59	144	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010250844.1	0.0	PREDICTED: trihelix transcription factor GT-1
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A1U7ZBE5	0.0	A0A1U7ZBE5_NELNU; trihelix transcription factor GT-1
STRING	XP_010250844.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]