PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004056-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family SBP
Protein Properties Length: 395aa    MW: 43523 Da    PI: 7.8317
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004056-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.62.6e-4192168278
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    C v+gC++dls++++yhrrhkvCe hsk+p+v+v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+
  NNU_004056-RA  92 CLVDGCKSDLSNCRDYHRRHKVCELHSKTPKVMVGGQEQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKPQP 168
                    **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.5E-3485153IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.99289166IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-3990171IPR004333Transcription factor, SBP-box
PfamPF031102.8E-3092165IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDWDLKTPSW DLAELEQEAI PNIAPLVGSS SFEGQKTKED CSVDLKLGRL GDSGDGSLDK  60
LKDPRIATML SSPSGSTKRA RTPGNGTQTV SCLVDGCKSD LSNCRDYHRR HKVCELHSKT  120
PKVMVGGQEQ RFCQQCSRFH LLVEFDEVKR SCRKRLDGHN RRRRKPQPES LAMNSGSLFP  180
KHQGTRLMPF ATTEMFPTTV VSPAWSAVVK TEVDATRYNH QQQLNFIDKQ NTFPGSFSRS  240
CYRGGKHFPF LQSNDVTLIN RTPSEASMCQ PLLNSIASSE SEGGRKMFSN GLTRVIDSDC  300
ALSLLSSPPM QSSGISMNHV VQPDPIPMAQ PLVPVLQYNG IGRYPCSQGM EDEQGGSVLA  360
PDASNADLHC HGVFQLGPYG SDRNGGPQTL PFSWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-27921651184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148165KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250660.10.0PREDICTED: teosinte glume architecture 1-like
RefseqXP_010250661.10.0PREDICTED: teosinte glume architecture 1-like
RefseqXP_010250662.10.0PREDICTED: teosinte glume architecture 1-like
TrEMBLA0A1U7ZAX40.0A0A1U7ZAX4_NELNU; teosinte glume architecture 1-like
STRINGXP_010250660.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-60SBP family protein