PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004001-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 263aa    MW: 29705.5 Da    PI: 8.8479
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004001-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.7e-52141381128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeelv +yLk+kv + +l++ ++i+evdi+k++PwdLp      e+e yfFs r+ ky++g+r+nrat sgyWkatg dk+++++ 
  NNU_004001-RA  14 LPPGFRFHPTDEELVLQYLKRKVFSCPLPA-SIIPEVDICKYDPWDLPGD---LENERYFFSAREAKYPNGNRSNRATGSGYWKATGLDKQIVASr 105
                    79****************************.89***************54...46799**********************************9985 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++++vg+kktLvfy+g+ p+g++tdWvmheyrl
  NNU_004001-RA 106 SNQVVGMKKTLVFYQGKPPRGTRTDWVMHEYRL 138
                    7778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6010175IPR003441NAC domain
PROSITE profilePS5100557.98214175IPR003441NAC domain
PfamPF023654.0E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEKFNFVRNG VIRLPPGFRF HPTDEELVLQ YLKRKVFSCP LPASIIPEVD ICKYDPWDLP  60
GDLENERYFF SAREAKYPNG NRSNRATGSG YWKATGLDKQ IVASRSNQVV GMKKTLVFYQ  120
GKPPRGTRTD WVMHEYRLVV PGTTVCISPH PQRKNSIQNS MIQMEDWVLC RIFLKKRSTK  180
SEEEISQPCK ENRVRSLGMA RPSFIDFMSK DRINSVSPSS SSSSSSASSG ITEVSSNGSD  240
HEESSSCNSF SSSPCREETH EAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-551218015170NO APICAL MERISTEM PROTEIN
1ut4_B4e-551218015170NO APICAL MERISTEM PROTEIN
1ut7_A4e-551218015170NO APICAL MERISTEM PROTEIN
1ut7_B4e-551218015170NO APICAL MERISTEM PROTEIN
4dul_A4e-551218015170NAC domain-containing protein 19
4dul_B4e-551218015170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250592.10.0PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY934e-94NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A1U7ZPK00.0A0A1U7ZPK0_NELNU; NAC domain-containing protein 83-like
STRINGXP_010250592.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-90NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]