PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003991-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family CO-like
Protein Properties Length: 511aa    MW: 56589.4 Da    PI: 6.6342
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003991-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.4e-061654537
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    C+ ++e+ + ++C+ ++  lC  C ++ H+       H
  NNU_003991-RA 16 LCDFCNEEIAVIYCRADSAKLCLFCDQHVHSAnalsrkH 54
                   7***************************99545555555 PP
2zf-B_box21.35.5e-0757102342
       zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                     ++C+++++++++  C +++  lC+dC    H +      H+++p+
  NNU_003991-RA  57 SQICDNCSSQPVSVRCSTDHLVLCQDCDWDAHGScslsatHERCPV 102
                    579**************************99*55999999999886 PP
3CCT54.35e-19451501144
            CCT   1 ReaallRYkeKrktRk.......FeKkirYesRKavAesRpRvKGrFvkqa 44 
                    R +a+lRYkeK+ktR+       ++K+irYesRKa+A++R+RvKGrFvk+ 
  NNU_003991-RA 451 RGNAMLRYKEKKKTRRhdppyllYDKHIRYESRKARADTRKRVKGRFVKAG 501
                    7789***********6555555599***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.3951259IPR000315B-box-type zinc finger
SMARTSM003363.7E-101259IPR000315B-box-type zinc finger
CDDcd000213.17E-71547No hitNo description
PROSITE profilePS501199.52755102IPR000315B-box-type zinc finger
CDDcd000212.68E-659102No hitNo description
SMARTSM003361.960102IPR000315B-box-type zinc finger
PfamPF062034.8E-15451500IPR010402CCT domain
PROSITE profilePS5101710.318458500IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MDQNPNKSRA TQSIILCDFC NEEIAVIYCR ADSAKLCLFC DQHVHSANAL SRKHLRSQIC  60
DNCSSQPVSV RCSTDHLVLC QDCDWDAHGS CSLSATHERC PVEGFSGCPS ALELSSIWGF  120
NLADKKHAMQ LPQSQVSQMG SDNFMMFPNW GSLNSVVSDD SWVYKSAAMT LQDLMLPSEN  180
GNSGTSMYPS VPSADIPLLS KKLSSSCGKQ TQVIFKQLVE LLKRDPVRGD GGGGGDGLGP  240
GTPAQQSNME DLELPDGGDG ATDATQLLHQ QTPFTSLLML STRMDLREIN NRLIEDNIPW  300
DCNPSDQAAQ VWDFNLGKSR DHDEAGPLEA QYAASDAGFM FKSYQDLIKE TPLPAKKVYD  360
NIYDISYSMA HDNKSSQNNN SNNPAASQGP TTSESNNFPL RKPSSSSSLG KYKTYSGTRD  420
VDFMEQSVFL RSDTLKPATT KADMELLAQN RGNAMLRYKE KKKTRRHDPP YLLYDKHIRY  480
ESRKARADTR KRVKGRFVKA GEAPDVEIKK S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250572.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like isoform X1
TrEMBLA0A1U7ZPI00.0A0A1U7ZPI0_NELNU; zinc finger protein CONSTANS-LIKE 14-like isoform X1
STRINGXP_010250572.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.11e-102B-box type zinc finger protein with CCT domain