PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_003952-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Trihelix

Protein Properties

Length: 343aa MW: 37870.2 Da PI: 6.9499

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_003952-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85	9.1e-27	40	134	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l Li++++ e+r+rrg+ +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++e++s +++ ++l+ NNU_003952-RA 40 RWTRQEILILIQGKKVAENRVRRGRasgsafgssNLEPKWASVSSYCKRHGVNREPVQCRKRWSNLAGDFKKIKEWESQIKEEAESFWAMRNDLR 134 8*******************98555666666577*******************************************99999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-12	40	130	No hit	No description
PROSITE profile	PS50090	6.47	40	106	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.9E-6	40	105	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MAHEQLSPPP PPVDGDPNAV PVSNGVDAAD DSNRPPRLPR WTRQEILILI QGKKVAENRV 60 RRGRASGSAF GSSNLEPKWA SVSSYCKRHG VNREPVQCRK RWSNLAGDFK KIKEWESQIK 120 EEAESFWAMR NDLRRERKLP GFFDREVYDI LTGGTGPITE LAVTTDGKSI ERAPTVVKEE 180 EKEAVFYSGR SAAADGGLFS DFEPPGQEEA GGESEKETAM GSPARTIPAP VPISEKQYQP 240 FSEGYLHQGT TSEKQPSTNP EKGSTSEKVK KRRRLSADGN GDTSVQDQLI EVLERNGRIL 300 SAQLEAQNLN CQLDRDQRKD HANNLVAVLG KLADALGRIA DKL

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MAHEQLSPPP PPVDGDPNAV PVSNGVDAAD DSNRPPRLPR WTRQEILILI QGKKVAENRV  60
RRGRASGSAF GSSNLEPKWA SVSSYCKRHG VNREPVQCRK RWSNLAGDFK KIKEWESQIK  120
EEAESFWAMR NDLRRERKLP GFFDREVYDI LTGGTGPITE LAVTTDGKSI ERAPTVVKEE  180
EKEAVFYSGR SAAADGGLFS DFEPPGQEEA GGESEKETAM GSPARTIPAP VPISEKQYQP  240
FSEGYLHQGT TSEKQPSTNP EKGSTSEKVK KRRRLSADGN GDTSVQDQLI EVLERNGRIL  300
SAQLEAQNLN CQLDRDQRKD HANNLVAVLG KLADALGRIA DKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	274	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010250529.1	0.0	PREDICTED: trihelix transcription factor ASR3-like
Swissprot	Q8VZ20	1e-113	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A1U7ZAI9	0.0	A0A1U7ZAI9_NELNU; trihelix transcription factor ASR3-like
STRING	XP_010250529.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-102	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]