PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003545-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 352aa    MW: 40696.7 Da    PI: 4.1583
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003545-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.64.3e-15154238286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    Wt++e+ +L++a  ++  +l+r++l+   W ev++k+ +e    r+ +qC+++++ l+k+yk++k    + t +++ +++yf++++
  NNU_003545-RA 154 WTEHETFVLLDAWGDRFLQLGRKSLRSDEWHEVANKVsEESNTIRTDTQCRNRLDTLKKKYKREKMKLAE-TGGTTCKWVYFKKMD 238
                    *************************************55666788***********************98.688999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-21153240No hitNo description
PROSITE profilePS500906.051154211IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.0E-4154218IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDDTDDDARY PPNPYSGNYH QNYGSSHRQK LPVRNASYLQ AGGNEYGDED EDEDEAEEEE  60
EEEEEEEDEE AGVQRVAEGA NEDEDDVEDD DGERDNYRRR VEVEDESERH RKKRKLKNLG  120
YEFAPRVAAP SVAATAVTTA PKPSFGGRNS PADWTEHETF VLLDAWGDRF LQLGRKSLRS  180
DEWHEVANKV SEESNTIRTD TQCRNRLDTL KKKYKREKMK LAETGGTTCK WVYFKKMDML  240
MTSSPRQPGL SCGLDSGEYV FMNPRKFGEI YEKIENSKRQ QLLELEKMRM EFHRDLELQK  300
RQILERAQAE IAKIRQGSDD DDNDDDDDND DDDDDDDDDD DEIDVSAENI SG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197114RRRVEVEDESERHRKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249791.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_010249792.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_010249793.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_010249794.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_010249795.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_010249796.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_010249797.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_010249798.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_010249799.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_010249800.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_010249801.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_019052392.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_019052393.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_019052394.10.0PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_019052395.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1U7ZNX80.0A0A1U7ZNX8_NELNU; trihelix transcription factor ASIL2-like
STRINGXP_010249791.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-53Trihelix family protein