PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_003516-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HSF

Protein Properties

Length: 338aa MW: 38070.1 Da PI: 9.1234

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_003516-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.7	5.7e-36	10	102	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 F+ k+y++++d++++++i w + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++sF +g+k+ll++i NNU_003516-RA 10 FVLKTYQMVNDPSTDSFIAWGKANNSFIVIDPIDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANESFLRGQKQLLRNI 96 9**************************************************************999.........*************** PP XXXXXX CS HSF_DNA-bind 98 krkkse 103 r+k++ NNU_003516-RA 97 VRRKNS 102 *987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.8E-54	6	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.2E-37	7	99	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.09E-33	7	99	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.3E-30	10	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.7E-18	10	33	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.7E-18	48	60	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	49	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.7E-18	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MEGSNLVAPF VLKTYQMVND PSTDSFIAWG KANNSFIVID PIDFSQRILP AYFKHNNFSS 60 FVRQLNTYGF RKVDPDRWEF ANESFLRGQK QLLRNIVRRK NSRNNSYQLH PKQEQEEEEE 120 EEEEILMEIV RLKQEQKALD KELEGMNKRL QATERRPQQM MAFLFKVVED PELISRIMLE 180 NSTMPKLVSE KKRRFITSSS PSSPSSSSSG GPNSPLPPPP PPPPPSMTKE VGKGTVVRPV 240 PLPAMGLVQN TYNPSSSSSN TWSWMNQRVP FLGQTSLITP DPFTPFTTTS ASGSATAMNS 300 YLADPYPVYS NQPHFLPDLG GSVQKTPPYP FSLLGGGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-26	1	102	11	123	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249742.1	0.0	PREDICTED: heat stress transcription factor C-1-like
Swissprot	Q9LV52	4e-84	HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBL	A0A1U7ZAS9	0.0	A0A1U7ZAS9_NELNU; heat stress transcription factor C-1-like
STRING	XP_010249742.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	1e-82	heat shock transcription factor C1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771]