PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003457-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family CPP
Protein Properties Length: 497aa    MW: 53337.4 Da    PI: 6.7467
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003457-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.43.4e-142362242
            TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                   ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C N+ e+
  NNU_003457-RA 23 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCANCYNNVEN 62
                   89**************************.********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.2E-152262IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163419.86623115IPR005172CRC domain
PfamPF036386.1E-112459IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MEQESPRSRL RPGFEVKDGT PKKQKQCNCK HSRCLKLYCE CFASGIYCDG CNCANCYNNV  60
ENEAARQEAV EVTLERNPNA FRPKIASSPH GTRDNRANIL CSENCKCLDC KNFEGSEERR  120
ALFHGDHGNA MAYIQQAANA AITGAIGSSG YGSPPTSKKR KNPELLFCNT AKDLSVHRLA  180
QFPQGNHLKA STSSPLSSVP VPRVVNPATL GSSKSAYRSL LADIVQPEDV KELCALLVVV  240
AGEAAKTLSD KSSITEMQAE REEQLDSSLA SSTQDKDSQK EPEPHKAVAD DRSSGTQADK  300
MGTDDSGSDG ADMQKGRPMS PGTLALMCDE QDSMFTTAPS PNGAISHGRN TPLRSPFGPG  360
MTEVYAEQER LILTGFRDYL RRLTACASIK ETNCSSLART TEAGCPQESV ANGTVKIPVS  420
ANADTQQLSA ATGVKILAPP NAQTFQTTGP VNCNSNNTVT THQAVSAVTT SNNGVLPRDR  480
QPSENGDVKP KIEKEDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-18151242132Protein lin-54 homolog
5fd3_B1e-18151242132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249672.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-148TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1U7ZMB60.0A0A1U7ZMB6_NELNU; protein tesmin/TSO1-like CXC 5
STRINGXP_010249672.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-136Tesmin/TSO1-like CXC domain-containing protein