PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_003323-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 245aa MW: 27953.8 Da PI: 10.0431 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 37.2 | 8e-12 | 138 | 184 | 2 | 48 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT- CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhs 48 Flkk+y++++d ++++++ ws+ nsf+ +d+++f++++LpkyF + NNU_003323-RA 138 FLKKTYDMVKDLATNSIVFWSKACNSFIFWDSHKFSTNLLPKYFAEN 184 9*******************************************876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.40.790 | 1.4E-23 | 12 | 109 | IPR008978 | HSP20-like chaperone |
SuperFamily | SSF49764 | 1.36E-16 | 29 | 108 | IPR008978 | HSP20-like chaperone |
PROSITE profile | PS01031 | 11.19 | 55 | 118 | IPR002068 | Alpha crystallin/Hsp20 domain |
Pfam | PF00011 | 4.3E-9 | 55 | 106 | IPR002068 | Alpha crystallin/Hsp20 domain |
Gene3D | G3DSA:1.10.10.10 | 4.2E-12 | 132 | 185 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.0E-5 | 134 | 234 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.02E-7 | 136 | 184 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.1E-9 | 138 | 185 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MSLISNIFGE RRSNIFNPFS LDIWDPFKGF PFSTTLSSVP NSARKTFAFV NARIDWKETP 60 EAHVFKADLP GLKKEEVKVE VKEGRVLQIS GERSREHEEN DKWNRRNAKR GLDLLVLPLR 120 MMPLQPMEGL HDAGPPLFLK KTYDMVKDLA TNSIVFWSKA CNSFIFWDSH KFSTNLLPKY 180 FAENTRSVMS LGIPPPYNRV YDSERKEATG GGLTKAANSR ERGREWTEPN RKKKGREDEG 240 EGGGG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gme_A | 8e-24 | 11 | 105 | 5 | 98 | HEAT SHOCK PROTEIN 16.9B |
1gme_B | 8e-24 | 11 | 105 | 5 | 98 | HEAT SHOCK PROTEIN 16.9B |
1gme_C | 8e-24 | 11 | 105 | 5 | 98 | HEAT SHOCK PROTEIN 16.9B |
1gme_D | 8e-24 | 11 | 105 | 5 | 98 | HEAT SHOCK PROTEIN 16.9B |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 219 | 232 | RERGREWTEPNRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26150.1 | 4e-21 | heat shock transcription factor A2 |