PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_003242-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 26476.5 Da PI: 7.0589 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.2e-20 | 51 | 100 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa a+++a++k++g NNU_003242-RA 51 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAESAAIAYDEAALKFKG 100 7********.**********94....45************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.3E-33 | 50 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.3E-38 | 51 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-22 | 51 | 109 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.803 | 51 | 108 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-14 | 51 | 100 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.23E-33 | 51 | 109 | No hit | No description |
PRINTS | PR00367 | 1.2E-11 | 52 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 74 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MVSSLAHVIG PADEKSAQVQ ANPLKVPESG MRELDPSQPP TQDQGNSRRR HYRGVRQRPW 60 GKWAAEIRDP KKAARVWLGT FDTAESAAIA YDEAALKFKG TKAKLNFPER VQGRTGLGCV 120 LGRHDSSHAA ALPNQVLVPS APAPAPSLSQ EMYPDLLQYA QLLCSRDEDL PFIASNLYNP 180 ESLVLPSYSW TTSWSSLSST SVLSQQQQQD LLSFSSHFGS SSSSSELPDQ RRESNSRDPI 240 D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-25 | 50 | 111 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-25 | 47 | 111 | 1 | 66 | ATERF1 |
3gcc_A | 2e-25 | 47 | 111 | 1 | 66 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Acts as positive regulator of tolerance to waterlogging stress. Delays waterlogging-induced premature senescence by regulating stomatal closure and antioxidant enzyme activity. May function through ABI1-mediated abscisic acid (ABA) signaling pathway (PubMed:22661072). Involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:22661072}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:16133218, PubMed:21069430). Induced drought stress, jasmonate (JA), salicylic acid (SA), abscisic acid (ABA) and ethylene. Down-regulated by freezing stress (PubMed:21069430). Induced by wounding in the flowering stem (PubMed:21911380). Induced by waterlogging. {ECO:0000269|PubMed:16133218, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010249458.1 | 1e-176 | PREDICTED: ethylene-responsive transcription factor ERF113 | ||||
Swissprot | Q9LYU3 | 9e-47 | EF113_ARATH; Ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | A0A1U7Z7U2 | 1e-175 | A0A1U7Z7U2_NELNU; ethylene-responsive transcription factor ERF113 | ||||
STRING | XP_010249458.1 | 1e-176 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 1e-40 | related to AP2 6l |