PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003237-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 340aa    MW: 37515.6 Da    PI: 5.3901
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003237-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.43.8e-2840133186
       trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rWt+qe+l+Li++++  e+r+rrg+         ++p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++e++s +++ ++l+
  NNU_003237-RA  40 RWTRQEILVLIQGKKVAENRVRRGRaagsafgsNIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIKEEAESFWVMRNDLR 133
                    8*********************985555566659**************************************************99*9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-540104IPR009057Homeodomain-like
PfamPF138376.5E-1240129No hitNo description
PROSITE profilePS500906.44640105IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MALERLSPSA APVDGDPNVV PLSNGVEGAD DGNRPPRLPR WTRQEILVLI QGKKVAENRV  60
RRGRAAGSAF GSNIEPKWAS VSSYCKRHGV NRGPVQCRKR WSNLAGDFKK IKEWESQIKE  120
EAESFWVMRN DLRRERKLPG FFDREVYDIL NGGTATVTEP ETVAIDVKNT EKTEGVAEED  180
EAVFDSGRSA AAEEGLFSDF EQSGQEEAGG SSEKEAATGS PATAVPAPVP ISEKQYHPFS  240
KGHLDQGTSE KQPTANPEKE STSQEGRKRR RLPSDGGHDT SLQDQLIEVL ERNSRMLTAQ  300
LEVQNMNCQL DRDQRKDHAD SLVAVLSKLA DALGRIADRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266270RKRRR
2267271KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249232.10.0PREDICTED: trihelix transcription factor ASR3-like
SwissprotQ8VZ201e-117ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A1U7ZLC40.0A0A1U7ZLC4_NELNU; trihelix transcription factor ASR3-like
STRINGXP_010249232.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-118Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]