PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003022-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 379aa    MW: 43180.4 Da    PI: 6.0484
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003022-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.92.4e-2765146286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    W ++e++ Li +rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++     s +++y+++le
  NNU_003022-RA  65 WVQDETRSLISLRREMDSLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKELE 146
                    ********************************************************************84...55689*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-455126IPR009057Homeodomain-like
PROSITE profilePS500908.68757121IPR017877Myb-like domain
SMARTSM007174.4E-561123IPR001005SANT/Myb domain
CDDcd122031.64E-2963128No hitNo description
PfamPF138379.0E-2264148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MYLSEKPRPI DFYKEEGRDM MIEVVGNGGL PPQQQPQQPQ QQMILAESSG EDHEVKAPKK  60
RAETWVQDET RSLISLRREM DSLFNTSKSN KHLWEQISSK MREKGFDRSP TMCTDKWRNL  120
LKEFKKAKHQ DRGSGSAKMS YYKELEELLR ERSKNAPYKS PTPSKVDSYI QFSDKGLEDA  180
SIPFGSVEAA GRSTLNLERR LDHDGHPLAI TTADAVAATG VPPWNWRETP GNGGESHSSY  240
GGRVISVKWG DYTRRIGIDG TADAIKEAIK SAFGLRTKRA FWLEDEDEVV RSLDRDMPVG  300
NYTLQLDEGL TIKVCLYDES DRLPVRTEEK TLYTEDDFRD FLTRRGWVGL RELSGFRSVD  360
TLDDLRPGAM YQGVRLLGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A7e-5159144186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00141DAPTransfer from AT1G13450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248872.10.0PREDICTED: trihelix transcription factor GT-1-like
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A1U7ZCD80.0A0A1U7ZCD8_NELNU; trihelix transcription factor GT-1-like
STRINGXP_010248872.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]