PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002975-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 450aa MW: 49193.4 Da PI: 6.232

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002975-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41.4	2.3e-13	93	116	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtGtC+yG++C+F+H+ NNU_002975-RA 93 EPDCSYYLRTGTCRYGSNCRFNHP 116 799********************8 PP
2	zf-CCCH	30.4	6.5e-10	152	176	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++rtG Ck+G C+++H++ NNU_002975-RA 152 QTECKYYLRTGGCKFGKACRYSHPR 176 679********************96 PP
3	zf-CCCH	34.1	4.7e-11	197	221	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Cky +C+F+H+ NNU_002975-RA 197 GEKECPYYMRTGSCKYATNCRFHHP 221 7899********************9 PP
4	zf-CCCH	33.8	5.9e-11	338	364	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Cky + Ck++H++ NNU_002975-RA 338 PGQPECSYFMKTGDCKYRSACKYHHPK 364 5789*********************96 PP
5	zf-CCCH	34.8	2.7e-11	385	409	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C ++ r+G+Ck+G+ CkF H+ NNU_002975-RA 385 DQSICTHYNRYGICKFGPACKFDHP 409 6789********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	5.0E-6	90	117	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.732	90	118	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-6	92	117	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-10	93	116	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-5	96	115	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.3E-6	149	176	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.741	149	177	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.1E-8	152	176	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.36E-6	152	177	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.4E-5	155	177	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-5	195	222	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.887	195	223	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-7	197	221	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.36E-6	197	222	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-4	201	220	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-4	337	364	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.61	337	365	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.7E-7	339	364	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.19E-5	341	365	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.7E-4	383	410	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.896	383	411	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	383	411	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.0E-9	385	409	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.3E-4	387	408	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MGDNEEVSVL KTEESPLGLL SSSPSSPSSS CVPDDVLSNT VAVETLEGEF QNLALEENTN 60 TDNNNEDNEN VGGDSDVKEE KINTFQYPQR SDEPDCSYYL RTGTCRYGSN CRFNHPIRWK 120 NQASGSSDPP ESVQVSKERE KENEGSPEKT GQTECKYYLR TGGCKFGKAC RYSHPREKSV 180 VGSPLELNFL GLPIRPGEKE CPYYMRTGSC KYATNCRFHH PDPTAVGGSD PLSGYNRSGS 240 VSLHSSGASQ PALTSWSSPR TSNDSVPYME ASTPYVPVVL PPPRGVHANS EWNGYQAPVY 300 PPERCIHPPS AMILNNPTKM VNPTTQQQTH GEEFPERPGQ PECSYFMKTG DCKYRSACKY 360 HHPKNRAPKS SVCTLSPMGL PLRPDQSICT HYNRYGICKF GPACKFDHPI NCAPSTSSIV 420 STPSQPPSFG VSSSLDGCGN GGDALIQQSV

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MGDNEEVSVL KTEESPLGLL SSSPSSPSSS CVPDDVLSNT VAVETLEGEF QNLALEENTN  60
TDNNNEDNEN VGGDSDVKEE KINTFQYPQR SDEPDCSYYL RTGTCRYGSN CRFNHPIRWK  120
NQASGSSDPP ESVQVSKERE KENEGSPEKT GQTECKYYLR TGGCKFGKAC RYSHPREKSV  180
VGSPLELNFL GLPIRPGEKE CPYYMRTGSC KYATNCRFHH PDPTAVGGSD PLSGYNRSGS  240
VSLHSSGASQ PALTSWSSPR TSNDSVPYME ASTPYVPVVL PPPRGVHANS EWNGYQAPVY  300
PPERCIHPPS AMILNNPTKM VNPTTQQQTH GEEFPERPGQ PECSYFMKTG DCKYRSACKY  360
HHPKNRAPKS SVCTLSPMGL PLRPDQSICT HYNRYGICKF GPACKFDHPI NCAPSTSSIV  420
STPSQPPSFG VSSSLDGCGN GGDALIQQSV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010248777.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
Swissprot	Q9STM4	1e-114	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A1U7ZK96	0.0	A0A1U7ZK96_NELNU; zinc finger CCCH domain-containing protein 67 isoform X1
STRING	XP_010248777.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-115	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]