PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_002898-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | NAC | ||||||||
Protein Properties | Length: 388aa MW: 43735.1 Da PI: 6.6008 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.3 | 4.8e-30 | 55 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........t 78 lp+G++F+P+d el+ e+L+ kv + + +e i++++ iy+++P++Lp +k++ +++yfF++++++y+ g+rk+r+ NNU_002898-RA 55 LPAGVKFDPSDVELL-EHLAGKVGVGDsephlfI--DELIPTLEgnegIYYTHPENLP-GAKKDGSSVYFFHRTANAYSIGHRKRRKihhqcnkgE 146 799************.99****987775666432..333444423344**********.55677899*******************8567766655 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+k+v++ +g ++g kk++v+y +++ +k+ k +Wvmh+y+l NNU_002898-RA 147 EHVRWHKTGKTKPVVE-NGMQKGFKKIMVLYksSKKGSKPDKYNWVMHQYHL 197 5889************.999***********4434666777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-35 | 39 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.579 | 55 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-13 | 56 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MVKSWLIDGR GIAAKVKNAT QFSSHQVKDL GANRQCPNCH HHIDNSDVSL EWPGLPAGVK 60 FDPSDVELLE HLAGKVGVGD SEPHLFIDEL IPTLEGNEGI YYTHPENLPG AKKDGSSVYF 120 FHRTANAYSI GHRKRRKIHH QCNKGEEHVR WHKTGKTKPV VENGMQKGFK KIMVLYKSSK 180 KGSKPDKYNW VMHQYHLGTE NDEKEGQYVV SKIFYQQKKK HTDKSDAEIE MVQASPRTPK 240 TKTPDIRQPR KGALCDVINE EKETEFIENA PQPPLSAVSL DDDRLDPAWW AGESQPVEDP 300 DPNAMDDLLL CNEIFDSYTP IDNSVGLSDL SCHRNDALTD VNTASGIPNL DDVEIGSAVW 360 FARKYYGLVR PTIESGHDLS FKTKYCFI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010248662.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like isoform X2 | ||||
Swissprot | Q6NQK2 | 2e-79 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1U7ZJZ6 | 0.0 | A0A1U7ZJZ6_NELNU; NAC domain-containing protein 73-like isoform X2 | ||||
STRING | XP_010248661.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 2e-93 | NAC domain containing protein 44 |