PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002894-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 389aa    MW: 43206.8 Da    PI: 5.0355
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002894-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-174897255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  NNU_002894-RA 48 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 97
                   59*******.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-114897IPR001471AP2/ERF domain
SMARTSM003802.3E-3348113IPR001471AP2/ERF domain
PROSITE profilePS5103222.11548105IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-2148105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-2948104IPR001471AP2/ERF domain
CDDcd000185.85E-3048104No hitNo description
PRINTSPR003672.2E-94960IPR001471AP2/ERF domain
PRINTSPR003672.2E-97187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEEAMRQLNG LTYSPEPDSK DLSSTEQQKK CNNKRSLKDG GGGGGTMRYR GVRRRPWGRY  60
AAEIRDPQSK ERRWLGTFDT AEEAACAYDC AARAMRGLKA RTNFVYPNSP PHSSTGHLLP  120
PFDFSRPSAP STRDLPTNRN VVCSDWSYWS NTRGVDASGL SQRNSSPNMH FLRDFLTSSS  180
GSSCSSASQL HDPSIPYCGC PPSAPCSFFS ATNPPFSSGV GSDLIELSLK GSSPGLLAVE  240
DRQDYTWPEA DTKKPTDDME FFPSESPDSG LLQEIISGFF PKPNSTESLS SSKMSNYSRE  300
SLVAPVSEMS LDSSFVEREI ENQHLRLYLD YQRQTQQVEV PQVGQHSQQT PFYNEASTNF  360
PLMTEGTLED IMQYPELLDI FAAKLQQNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18481041471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249428.10.0PREDICTED: ethylene-responsive transcription factor ESR1-like
TrEMBLA0A1U7ZN150.0A0A1U7ZN15_NELNU; ethylene-responsive transcription factor ESR1-like
STRINGXP_010249428.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.16e-14ERF family protein