PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002805-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

YABBY

Protein Properties

Length: 168aa MW: 18854.6 Da PI: 7.7561

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002805-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	189.6	1.5e-58	7	156	5	159
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 + eq+CyvqC+fC+til+vsvP +sl+kvvtvrCGhCt llsvn+ kas q+la+ ++ +e+ ++ +++ + + +++s+ v NNU_002805-RA 7 HLQEQICYVQCGFCDTILLVSVPCSSLLKVVTVRCGHCTGLLSVNMVKASffplQVLASLND------DEQRNDVDDQTVEPLKASDERHSPPLMV 96 5789***************************************99988533333333332......2222222222222222222333333333 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 ss +++++e +p p v++PPekrqr+Psaynrfikeeiqr+ka P+++h+eafs+aakn NNU_002805-RA 97 SS---DNDDEERIPVNPIVNKPPEKRQRAPSAYNRFIKEEIQRLKAREPNMTHKEAFSTAAKN 156 33...5677778888888******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.9E-58	9	156	IPR006780	YABBY protein
SuperFamily	SSF47095	6.15E-6	112	155	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	6.9E-4	114	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MSAACNHLQE QICYVQCGFC DTILLVSVPC SSLLKVVTVR CGHCTGLLSV NMVKASFFPL 60 QVLASLNDDE QRNDVDDQTV EPLKASDERH SPPLMVSSDN DDEERIPVNP IVNKPPEKRQ 120 RAPSAYNRFI KEEIQRLKAR EPNMTHKEAF STAAKNLKAK NLGSRRFL

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010248516.1	1e-113	PREDICTED: axial regulator YABBY 4
Swissprot	Q9LDT3	3e-53	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A1U7Z7V4	1e-112	A0A1U7Z7V4_NELNU; axial regulator YABBY 4
STRING	XP_010248516.1	1e-112	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-55	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]