PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002675-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family M-type_MADS
Protein Properties Length: 279aa    MW: 30665.6 Da    PI: 4.9564
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002675-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.66.9e-131057249
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                   +ie k + +v fskRr+g++KKA+ L  L + + a iifs+ gk++++
  NNU_002675-RA 10 KIECKEKLNVCFSKRRTGLFKKAKKLDDLSGSKTATIIFSPAGKVFTF 57
                   688899999**************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.4E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.156161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-18175IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-11323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-161057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRRRIKIEK IECKEKLNVC FSKRRTGLFK KAKKLDDLSG SKTATIIFSP AGKVFTFGDP  60
VVDSLIDRHL LLHHHQPQLL NQSSVAIEDD NGKVDLNDSE DRMREIESLL MRGKENVMKR  120
VLEQQQKQLA VPSSSCFQSA LLPNESLSGI SFYSSSSSLE TFGVNGFENP VQLEQPESAS  180
AGVSSSSLGG FGAVGCEAQP ERTELEFATD PVLQPDLFFD IDELLKTLSD PLTPEEPTDL  240
NIDHHQQQQL GQGFKNGGIL SESAAENTLL LLHHCSLGA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248457.10.0PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U7Z7Q80.0A0A1U7Z7Q8_NELNU; agamous-like MADS-box protein AGL62
STRINGXP_010248457.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-15AGAMOUS-like 62