PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002626-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 316aa MW: 35586.8 Da PI: 6.8345

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002626-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.7	5.3e-38	30	85	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprCds+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ NNU_002626-RA 30 PNCPRCDSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 85 68***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	16	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.91	30	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.4E-32	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MFTQSEKVLP CPPRPLVMNG RWKPNVEVAP NCPRCDSSNT KFCYYNNYSL TQPRYFCKGC 60 RRYWTKGGSL RNVPVGGGCR KNRRGKSVRI STERSLGGLD RSRLPPDDPS GRNLYRLDGA 120 NIIAPSAEAT RSDASNIDLA VLYAKFLNQR PPDSDPPTMP AEFPRELDSS LEFPSISNPT 180 HNPQLQFSHE LGIIGSQCSM EHCSADTQLS EIQQVLLGDQ FGMNSRQQER IPQFTSLDTN 240 AYALQPLMPV EEVTAHHQDI FWSNSPVVDS NLTWPAAQFQ GFESVHHDHH PTLHSNPIDG 300 NWSSFDLPNY EPFLRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019053989.1	1e-137	PREDICTED: dof zinc finger protein DOF1.2-like
TrEMBL	A0A1U8Q5B0	1e-136	A0A1U8Q5B0_NELNU; dof zinc finger protein DOF1.2-like
STRING	XP_010263162.1	1e-116	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	2e-40	Dof family protein