PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002551-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

TCP

Protein Properties

Length: 515aa MW: 55937.2 Da PI: 5.9339

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002551-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	64.2	4.8e-20	77	138	9	70
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 ++hTk gRdRRvRl+a ca +F L++eLG+++ ++ti WLl+q p + ss++ NNU_002551-RA 77 RDRHTKFQGRDRRVRLPAACAPGIFRLTQELGLKTGGETILWLLEQVRPDLVAPKTISSKKV 138 69***********************************************9887655533333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.3E-17	75	142	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	16.967	76	130	IPR017887	Transcription factor TCP subgroup
SuperFamily	SSF56317	1.57E-66	196	480	IPR003010	Carbon-nitrogen hydrolase
Gene3D	G3DSA:3.60.110.10	2.8E-70	197	480	IPR003010	Carbon-nitrogen hydrolase
CDD	cd07564	9.53E-120	198	480	No hit	No description
PROSITE profile	PS50263	40.725	198	503	IPR003010	Carbon-nitrogen hydrolase
Pfam	PF00795	4.1E-59	199	477	IPR003010	Carbon-nitrogen hydrolase
PROSITE pattern	PS00920	0	230	245	IPR000132	Nitrilase/cyanide hydratase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0016810	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
KSVSCLAPSR QPDSFHGSGL IKENPETEEC TLDLRTAAHV HENLQCIAMD VEIEPQPHED 60 EVQNTEKKKR RRPISGRDRH TKFQGRDRRV RLPAACAPGI FRLTQELGLK TGGETILWLL 120 EQVRPDLVAP KTISSKKVSQ ANSADDSVLV PEPISVAYPR DAVNGRFIDS APVSNGDEPV 180 MSIVKAETTD HPGPRPTIRA TVVQASTVFY DTRATLDKAE RLIAGAAAYG SQIVVFPEAF 240 VGGYPRSSCF DVAAGTYPNE GNMELQKYHA AAVEIPGPEI ERLAAIAGRY KVHLVMGVVE 300 REGFSLYCTV VFFNPHGEYL GKHRKLMRTA SEHTVWCSGD KSTPPVYETS IGKIGGLICW 360 DNRMPVLRTG LYARGVEIYC APTSDASDLW RSSLAHIALE GGCFILSANQ FCQRKDYPLP 420 GEHMPGDEKS DMPPDSVVCS GGSVIISPSG AILAGPNYQG ESLISADLDL EEITRAKLEF 480 NGGEAQCGTN SLALETSKSN TVPYAPSVKK DVTGE

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

KSVSCLAPSR QPDSFHGSGL IKENPETEEC TLDLRTAAHV HENLQCIAMD VEIEPQPHED  60
EVQNTEKKKR RRPISGRDRH TKFQGRDRRV RLPAACAPGI FRLTQELGLK TGGETILWLL  120
EQVRPDLVAP KTISSKKVSQ ANSADDSVLV PEPISVAYPR DAVNGRFIDS APVSNGDEPV  180
MSIVKAETTD HPGPRPTIRA TVVQASTVFY DTRATLDKAE RLIAGAAAYG SQIVVFPEAF  240
VGGYPRSSCF DVAAGTYPNE GNMELQKYHA AAVEIPGPEI ERLAAIAGRY KVHLVMGVVE  300
REGFSLYCTV VFFNPHGEYL GKHRKLMRTA SEHTVWCSGD KSTPPVYETS IGKIGGLICW  360
DNRMPVLRTG LYARGVEIYC APTSDASDLW RSSLAHIALE GGCFILSANQ FCQRKDYPLP  420
GEHMPGDEKS DMPPDSVVCS GGSVIISPSG AILAGPNYQG ESLISADLDL EEITRAKLEF  480
NGGEAQCGTN SLALETSKSN TVPYAPSVKK DVTGE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3wuy_A	1e-34	198	477	16	289	Nitrilase
3wuy_B	1e-34	198	477	16	289	Nitrilase
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	72	EKKKRRRP
2	66	71	KKKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269\|PubMed:10574458, ECO:0000269\|PubMed:11060302}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269\|PubMed:10574458}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246167.1	0.0	PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B
Swissprot	Q42966	1e-147	NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B
TrEMBL	A0A1U7Z252	0.0	A0A1U7Z252_NELNU; bifunctional nitrilase/nitrile hydratase NIT4B
STRING	XP_010246167.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	9e-18	TCP domain protein 16

Publications ? help Back to Top
Dohmoto M,Sano J,Tsunoda H,Yamaguchi K Structural analysis of the TNIT4 genes encoding nitrilase-like protein from tobacco. DNA Res., 1999. 6(5): p. 313-7 [PMID:10574458] Piotrowski M,Schönfelder S,Weiler EW The Arabidopsis thaliana isogene NIT4 and its orthologs in tobacco encode beta-cyano-L-alanine hydratase/nitrilase. J. Biol. Chem., 2001. 276(4): p. 2616-21 [PMID:11060302]