PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002531-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 263aa    MW: 30035.5 Da    PI: 6.4006
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002531-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1484.7e-46151451127
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                    lppGfrF Pt+eel+++yL  k+egk+ +l+ vi+ +diy+++Pw+Lp+     ++++ ++w+fF++r++++a+g r+nr+t+sgyWkatg+   v
  NNU_002531-RA  15 LPPGFRFYPTEEELITFYLGSKLEGKRDDLDCVIPVLDIYELDPWQLPQlsgvLCHGDPEQWFFFTPRQEREARGGRPNRTTNSGYWKATGSPGYV 110
                    79*************************999888***************656654455777************************************ PP

            NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127
                    +s++++ vglkkt+vfykg+ap+g+kt+W m+ey+
  NNU_002531-RA 111 YSSNSRIVGLKKTMVFYKGKAPTGRKTKWKMNEYK 145
                    **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-5110173IPR003441NAC domain
PROSITE profilePS5100550.7815173IPR003441NAC domain
PfamPF023655.2E-2416145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEQTTERSRA SMEDLPPGFR FYPTEEELIT FYLGSKLEGK RDDLDCVIPV LDIYELDPWQ  60
LPQLSGVLCH GDPEQWFFFT PRQEREARGG RPNRTTNSGY WKATGSPGYV YSSNSRIVGL  120
KKTMVFYKGK APTGRKTKWK MNEYKAIQAE ATSSNSATPV LRKEFSLCRV YVKTGCLRAF  180
DRRPDGATTS EAPEQQAHHH VDRSTAFHQN PPSVDKTSSS PERSPSGDVH AYQSDQLGDF  240
INWEMADDFH PICPWELDQL NWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-381517317165NO APICAL MERISTEM PROTEIN
1ut4_B5e-381517317165NO APICAL MERISTEM PROTEIN
1ut7_A5e-381517317165NO APICAL MERISTEM PROTEIN
1ut7_B5e-381517317165NO APICAL MERISTEM PROTEIN
4dul_A5e-381517317165NAC domain-containing protein 19
4dul_B5e-381517317165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245803.10.0PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR34e-84NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A1U7ZD070.0A0A1U7ZD07_NELNU; NAC domain-containing protein 90-like
STRINGXP_010245803.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-86NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]